BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0231700 Os07g0231700|Os07g0231700
         (118 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0231700  Conserved hypothetical protein                      141   9e-35

>Os07g0231700 Conserved hypothetical protein
          Length = 118

 Score =  141 bits (356), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 74/118 (62%)

Query: 1   MEKKKTTRAEDAGADVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFRNNFXXXXXXXX 60
           MEKKKTTRAEDAGADVD                             LFRNNF        
Sbjct: 1   MEKKKTTRAEDAGADVDAQLPARRVAAAAEPKRAPGADAYAAARYRLFRNNFVAAAVAVA 60

Query: 61  XXXXXXXHTILCRDDPTVVPRYVLPLLVMCCATAEVVRNYVQMYGWSVPMGVARFRMK 118
                  HTILCRDDPTVVPRYVLPLLVMCCATAEVVRNYVQMYGWSVPMGVARFRMK
Sbjct: 61  LCLGALVHTILCRDDPTVVPRYVLPLLVMCCATAEVVRNYVQMYGWSVPMGVARFRMK 118



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,342,676
Number of extensions: 54647
Number of successful extensions: 117
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)