Os07g0231700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0231700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.92 | 0.425 | 13.6 | -1.15 | 2.19 | 1.35 | 0.985 | -3.64 | -0.743 | 19.4 | 24.42 | 781 | -- | -- |
| 84.85 | 0.429 | 13.5 | -0.531 | 2.61 | 0.93 | 0.706 | -- | -0.606 | 19.3 | 17.21 | 2628 | -- | -- |
| 84.14 | 0.427 | 13.5 | -1.04 | 2.18 | 1.32 | -- | -2.71 | -0.73 | 19.4 | 24.3 | 750 | -- | -- |
| 85.22 | 0.43 | 13.5 | -0.616 | 2.53 | 1.06 | -- | -- | -0.675 | 19.6 | 17.12 | 1892 | -- | -- |
| 236.85 | 0.717 | 13.5 | -1.44 | -- | 3.24 | -- | -4.21 | -0.896 | -- | 24.39 | 597 | -- | -- |
| 107.49 | 0.486 | 13.5 | -0.242 | 2.6 | -- | 0.724 | -- | -0.462 | 19.6 | -- | -- | -- | -- |
| 108.95 | 0.489 | 13.5 | -0.26 | 2.6 | -- | -- | -- | -0.461 | 19.6 | -- | -- | -- | -- |
| 248.01 | 0.733 | 13.5 | -0.839 | -- | 2.8 | -- | -- | -0.77 | -- | 24.31 | 577 | -- | -- |
| 94.38 | 0.452 | 13.5 | -- | 2.53 | 0.739 | -- | -- | -0.57 | 19.5 | 19.15 | 1896 | -- | -- |
| 471.82 | 1.01 | 13.4 | -0.298 | -- | -- | -- | -- | -0.5 | -- | -- | -- | -- | -- |
| 110.74 | 0.492 | 13.5 | -- | 2.6 | -- | -- | -- | -0.432 | 19.6 | -- | -- | -- | -- |
| 265.69 | 0.759 | 13.4 | -- | -- | 2.65 | -- | -- | -0.661 | -- | 24.4 | 567 | -- | -- |
| 474.15 | 1.02 | 13.4 | -- | -- | -- | -- | -- | -0.467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.46 | temperature | 15.0 | 270 | > th | dose dependent | sin | 16 | NA |
| 2 | 78.46 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 14 |
| 10 | 79.31 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 13 | 79.38 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 15 | 79.44 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 25 | 79.65 | temperature | 30.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 27 | 79.69 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 31 | 79.76 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 50 | 80.07 | temperature | 20.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 61 | 80.20 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 105 | 80.74 | temperature | 10.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 157 | 81.44 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 17 |
| 163 | 81.49 | temperature | 30.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 176 | 81.57 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 13 |
| 180 | 81.59 | temperature | 25.0 | 720 | < th | dose independent | rect. | 4 | 18 |
| 207 | 81.81 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 238 | 82.07 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 254 | 82.14 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 14 |
| 277 | 82.22 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 6 |
| 289 | 82.26 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 331 | 82.38 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 335 | 82.40 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 359 | 82.47 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 373 | 82.47 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 377 | 82.48 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 380 | 82.48 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 10 | 7 |
| 383 | 82.49 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 398 | 82.53 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 401 | 82.53 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 403 | 82.54 | temperature | 25.0 | 720 | > th | dose independent | sin | 21 | NA |
| 428 | 82.58 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 433 | 82.59 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 440 | 82.61 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 14 |
| 481 | 82.68 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 500 | 82.72 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 551 | 82.82 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 15 |
| 568 | 82.85 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 584 | 82.88 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 598 | 82.91 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 623 | 82.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 17 |
| 624 | 82.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 19 |
| 631 | 82.95 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 638 | 82.96 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 647 | 82.97 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 649 | 82.97 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 15 | 15 |
| 660 | 83.00 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 663 | 83.01 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 673 | 83.02 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 680 | 83.03 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 706 | 83.04 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 737 | 83.07 | temperature | 15.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 752 | 83.08 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 767 | 83.08 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 14 | 16 |
| 774 | 83.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 779 | 83.10 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 784 | 83.10 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 785 | 83.10 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 18 | 6 |
| 800 | 83.11 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 14 | 14 |
| 801 | 83.12 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 840 | 83.15 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 844 | 83.15 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 882 | 83.17 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 14 | NA |
| 890 | 83.18 | radiation | 1.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 905 | 83.19 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 916 | 83.19 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 926 | 83.20 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 928 | 83.20 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 5 |