BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0227700 Os07g0227700|AK120258
         (835 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0227700  Conserved hypothetical protein                     1751   0.0  
Os09g0309100  Zinc finger, SWIM-type domain containing protein    577   e-164

>Os07g0227700 Conserved hypothetical protein
          Length = 835

 Score = 1751 bits (4535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/835 (100%), Positives = 835/835 (100%)

Query: 1   MARWDEILTLPVQNPPTPEFSASDIMWSRVEGWKDSMDRLALIPFSRVNDFVRGESNNKE 60
           MARWDEILTLPVQNPPTPEFSASDIMWSRVEGWKDSMDRLALIPFSRVNDFVRGESNNKE
Sbjct: 1   MARWDEILTLPVQNPPTPEFSASDIMWSRVEGWKDSMDRLALIPFSRVNDFVRGESNNKE 60

Query: 61  CPTRFHVEARRRRPPTMNCKPKVDGILEYILYWCSFGPDDYRKGGSVRPSRNSSTKRKTP 120
           CPTRFHVEARRRRPPTMNCKPKVDGILEYILYWCSFGPDDYRKGGSVRPSRNSSTKRKTP
Sbjct: 61  CPTRFHVEARRRRPPTMNCKPKVDGILEYILYWCSFGPDDYRKGGSVRPSRNSSTKRKTP 120

Query: 121 AGRPHTKRGCICHFIVKRLIAEPSVALVIYNHDKHVDKIGKPCHGPMDNMAIGTKAMFAP 180
           AGRPHTKRGCICHFIVKRLIAEPSVALVIYNHDKHVDKIGKPCHGPMDNMAIGTKAMFAP
Sbjct: 121 AGRPHTKRGCICHFIVKRLIAEPSVALVIYNHDKHVDKIGKPCHGPMDNMAIGTKAMFAP 180

Query: 181 YISDELRLQIMSLLCVGIPVETIMQRHTEMIEKQGGPSNRDGLLTHRYVRRLERKIRRSV 240
           YISDELRLQIMSLLCVGIPVETIMQRHTEMIEKQGGPSNRDGLLTHRYVRRLERKIRRSV
Sbjct: 181 YISDELRLQIMSLLCVGIPVETIMQRHTEMIEKQGGPSNRDGLLTHRYVRRLERKIRRSV 240

Query: 241 YELDDDDAISINIWVENHQNHIFLYEDFSDKDTFIVGIQTDWQLQQMIQYGNRSLLASDS 300
           YELDDDDAISINIWVENHQNHIFLYEDFSDKDTFIVGIQTDWQLQQMIQYGNRSLLASDS
Sbjct: 241 YELDDDDAISINIWVENHQNHIFLYEDFSDKDTFIVGIQTDWQLQQMIQYGNRSLLASDS 300

Query: 301 KFGTNKLKYPVHSLLVFDKQKNAIPVAWIITPNFSHGEAYRWMGALYDRVRTKDPTWQLG 360
           KFGTNKLKYPVHSLLVFDKQKNAIPVAWIITPNFSHGEAYRWMGALYDRVRTKDPTWQLG
Sbjct: 301 KFGTNKLKYPVHSLLVFDKQKNAIPVAWIITPNFSHGEAYRWMGALYDRVRTKDPTWQLG 360

Query: 361 GFIIDDPFADVRTIREVFQCPVLISPWRIRHAWHKNLMKKCPDIEKRPMMAKRLGELICN 420
           GFIIDDPFADVRTIREVFQCPVLISPWRIRHAWHKNLMKKCPDIEKRPMMAKRLGELICN
Sbjct: 361 GFIIDDPFADVRTIREVFQCPVLISPWRIRHAWHKNLMKKCPDIEKRPMMAKRLGELICN 420

Query: 421 ICRGNGGMELFEAFLEDFVDCAGFLDYFRALWFPRLGSWITMLRTTPLATTEVASAIESY 480
           ICRGNGGMELFEAFLEDFVDCAGFLDYFRALWFPRLGSWITMLRTTPLATTEVASAIESY
Sbjct: 421 ICRGNGGMELFEAFLEDFVDCAGFLDYFRALWFPRLGSWITMLRTTPLATTEVASAIESY 480

Query: 481 HHLLKLRLLNEANERVYQRADWLVHKLGTKVHSYYWLDEYSGKDNFSRYWRSEWKSGPNP 540
           HHLLKLRLLNEANERVYQRADWLVHKLGTKVHSYYWLDEYSGKDNFSRYWRSEWKSGPNP
Sbjct: 481 HHLLKLRLLNEANERVYQRADWLVHKLGTKVHSYYWLDEYSGKDNFSRYWRSEWKSGPNP 540

Query: 541 WQQGLQIPDSDVVVEGNCARVVCQKNKERSHVIVNPGSDLALCDCSWSRKGNICKHAIKS 600
           WQQGLQIPDSDVVVEGNCARVVCQKNKERSHVIVNPGSDLALCDCSWSRKGNICKHAIKS
Sbjct: 541 WQQGLQIPDSDVVVEGNCARVVCQKNKERSHVIVNPGSDLALCDCSWSRKGNICKHAIKS 600

Query: 601 TKVFRQRGLAPPSLALFRYYQALANVVHCPPSDTLISDHAVAVAIFVRTQLDSLLDATNG 660
           TKVFRQRGLAPPSLALFRYYQALANVVHCPPSDTLISDHAVAVAIFVRTQLDSLLDATNG
Sbjct: 601 TKVFRQRGLAPPSLALFRYYQALANVVHCPPSDTLISDHAVAVAIFVRTQLDSLLDATNG 660

Query: 661 NSSNRSTSKDPQSVIEPRESDVREGSIENDVCASQSQAECGDEVSDEQNDDLDRFVFKKR 720
           NSSNRSTSKDPQSVIEPRESDVREGSIENDVCASQSQAECGDEVSDEQNDDLDRFVFKKR
Sbjct: 661 NSSNRSTSKDPQSVIEPRESDVREGSIENDVCASQSQAECGDEVSDEQNDDLDRFVFKKR 720

Query: 721 KSREASDEEGSPTATQITQPSETESSQATDLQEPLDRRENRAPKKSKSKEASDGGKANAR 780
           KSREASDEEGSPTATQITQPSETESSQATDLQEPLDRRENRAPKKSKSKEASDGGKANAR
Sbjct: 721 KSREASDEEGSPTATQITQPSETESSQATDLQEPLDRRENRAPKKSKSKEASDGGKANAR 780

Query: 781 QAKQPSETESRPAIDQQEPLHHRQENPAHKKTKSGEASDGEETMAMQVMEPSETE 835
           QAKQPSETESRPAIDQQEPLHHRQENPAHKKTKSGEASDGEETMAMQVMEPSETE
Sbjct: 781 QAKQPSETESRPAIDQQEPLHHRQENPAHKKTKSGEASDGEETMAMQVMEPSETE 835



>Os09g0309100 Zinc finger, SWIM-type domain containing protein
          Length = 729

 Score =  577 bits (1486), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/685 (41%), Positives = 425/685 (62%), Gaps = 12/685 (1%)

Query: 10  LPVQNPPTPEFSASDIMWSRVEGWKDSMDRLALIPFSRVNDFVRGESNNKECPTRFHVEA 69
           L VQ+PP  EFSA+D+ W +    +   D +ALIP+ R++ F+ GE +N ECPTRFH+E 
Sbjct: 17  LAVQDPPGEEFSAADLRWVKYASSEHQRDDVALIPYERMDAFIAGECSNPECPTRFHIER 76

Query: 70  RRRRPPTMNCKPKVDGILEYILYWCSFGPDDYRKGGSVRPSRNSSTKRKTPAGRPHTKRG 129
            R+R      + + D  L Y +YWCSFGP++Y +GG++ PSR      +  A RP + RG
Sbjct: 77  GRKRDRGTLREVRSDDYLLYRMYWCSFGPENYGEGGTILPSRKYRLNTRNRAARPQSMRG 136

Query: 130 CICHFIVKRLIAEPSVALVIYNHDKHVDKIGKPCHGPMDNMAIGTKAMFAPYISDELRLQ 189
           C CHF +KRL A PS+ L+IY+  +H++K G  CHGP+D  AIG  A   PY+  E++ Q
Sbjct: 137 CTCHFAIKRLYARPSLVLIIYHERRHINKSGFICHGPLDRDAIGPGARRVPYVGSEIQQQ 196

Query: 190 IMSLLCVGIPVETIMQRHTEMIEKQGGPSNRDGLLTHRYVRRLERKIRRSVYELDDDDAI 249
            MSL+ +G+P E I+Q H E I +  G   +   L  +YV++L   I+RS +ELD DD  
Sbjct: 197 TMSLIYLGVPEENILQTHMEGIHRYCGSDAKVDSLASQYVQKLGMIIKRSTHELDLDDQA 256

Query: 250 SINIWVENHQNHIFLYEDFSDKDTFIVGIQTDWQLQQMIQYGNRSLLASDSKFGTNKLKY 309
           SI +WV+ ++  +F Y+D +D D F++GIQT+WQLQQMI++G++ LLAS S FG +KLKY
Sbjct: 257 SIRMWVDRNKKSVFYYQDSTDTDAFVLGIQTEWQLQQMIRFGHQDLLASHSSFGVSKLKY 316

Query: 310 PVHSLLVFDKQKNAIPVAWIITPNFSHGEAYRWMGALYDRVRTKDPTWQLGGFIIDDPFA 369
           P+H+LLVFD +++A+PVAWIIT + +  +  RWM AL +R+ + D TW++GGF+IDDP +
Sbjct: 317 PLHTLLVFDSRQHALPVAWIITRSVTKQDTLRWMKALTERIYSVDSTWRIGGFVIDDPAS 376

Query: 370 DVRTIREVFQCPVLISPWRIRHAWHKNLMKKCPDIEKRPMMAKRLGELICNICRGNGGME 429
           ++  IR+VF CP+L S W IR  W KN++KKC + E +  M  +LG+++ +I      M+
Sbjct: 377 ELDPIRDVFSCPILFSLWHIRRTWLKNIIKKCSNSEVQREMFMQLGKVMYSIWSEKNPMD 436

Query: 430 LFEAFLEDFVDCAGFLDYFRALWFPRLGSWITMLRTTPLATTEVASAIESYHHLLKLRLL 489
             E   +DFVD   F+ YF++ W P+L  WI  +R+ PLA+ E +  IE YH  LK++  
Sbjct: 437 ALEQLFQDFVDQTTFIQYFKSFWVPKLEMWIDTIRSLPLASQESSGTIEGYHLKLKVKAY 496

Query: 490 NEANERVYQRADWLVHKLGTKVHSYYWLDEYSGKDNFSRYWRSEWKSGPNPWQQGLQIPD 549
           +++     QR DWLVHKL T++HS YWL+ Y+ +       ++E+ +  + W + LQIPD
Sbjct: 497 DDSQLDALQRVDWLVHKLTTELHSSYWLNLYADESGSFPEVKAEYIASTS-WHRALQIPD 555

Query: 550 SDVVV---EGNCARVVCQKNKERSHVIVNPGSDLALCDCSWSRKGNICKHAIKSTKVFRQ 606
             V+    E   A+V  QK+  +   + NPGS+ +LCDCSWS +GN+CKH IK   +   
Sbjct: 556 DAVIFDDKEPFSAKVTSQKDTSQMWTVWNPGSEFSLCDCSWSMQGNLCKHIIKVNMMCGP 615

Query: 607 RGLAPPSLALFRYYQALANVVHCPPSDTLISDHAVAVAIFVRTQLDSLLDATNGNS---- 662
           R    PSL+   + + L ++   P  D+   D +VA  + ++ ++  + +    +     
Sbjct: 616 RKDFQPSLSFQSFQRVLLDLWQKPMDDSFSLDLSVAWVMQMQERIQKVTELATADGIAEV 675

Query: 663 SNRS----TSKDPQSVIEPRESDVR 683
           SNR     T+K  + V   R S +R
Sbjct: 676 SNRLPIQWTNKKGRKVAAKRTSPLR 700



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,702,590
Number of extensions: 1428077
Number of successful extensions: 4960
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4954
Number of HSP's successfully gapped: 2
Length of query: 835
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 726
Effective length of database: 11,344,475
Effective search space: 8236088850
Effective search space used: 8236088850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)