BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0214300 Os07g0214300|AK107328
(166 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0214300 Seed allergenic protein RAG2 precursor 306 4e-84
Os07g0215500 Allergenic protein 224 3e-59
Os07g0214600 Similar to Seed allergenic protein RA17 precursor 215 1e-56
Os07g0213800 Similar to Allergenic protein 207 2e-54
D43658 206 9e-54
Os07g0213700 115 1e-26
>Os07g0214300 Seed allergenic protein RAG2 precursor
Length = 166
Score = 306 bits (784), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 148/166 (89%)
Query: 1 MASNKXXXXXXXXXXXXXXXXXXTMADHHKDQVVYSLGERCQPGMGYPMYSLPRCRAVVK 60
MASNK TMADHHKDQVVYSLGERCQPGMGYPMYSLPRCRAVVK
Sbjct: 1 MASNKVVFSALLLIIVSVLAATATMADHHKDQVVYSLGERCQPGMGYPMYSLPRCRAVVK 60
Query: 61 RQCVGHGAPGGAVDEQLRQDCCRQLAAVDDSWCRCSALNHMVGGIYRELGATDVGHPMAE 120
RQCVGHGAPGGAVDEQLRQDCCRQLAAVDDSWCRCSALNHMVGGIYRELGATDVGHPMAE
Sbjct: 61 RQCVGHGAPGGAVDEQLRQDCCRQLAAVDDSWCRCSALNHMVGGIYRELGATDVGHPMAE 120
Query: 121 VFPGCRRGDLERAAASLPAFCNVDIPNGTGGVCYWLGYPRTPRTGH 166
VFPGCRRGDLERAAASLPAFCNVDIPNGTGGVCYWLGYPRTPRTGH
Sbjct: 121 VFPGCRRGDLERAAASLPAFCNVDIPNGTGGVCYWLGYPRTPRTGH 166
>Os07g0215500 Allergenic protein
Length = 160
Score = 224 bits (570), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/157 (71%), Positives = 123/157 (78%), Gaps = 3/157 (1%)
Query: 1 MASNKXXXXXXXXXXXXXXXXXXTMAD-HHKDQVVYSLGERCQPGMGYPMYSLPRCRAVV 59
MASNK TMA+ HH+DQVVY+ G CQPGMGYPMY LPRCRA+V
Sbjct: 1 MASNKVVFSVLLLAVVSVLAATATMAEYHHQDQVVYTPGPLCQPGMGYPMYPLPRCRALV 60
Query: 60 KRQCVGHGAPGGAVDEQLRQDCCRQLAAVDDSWCRCSALNHMVGGIYRELGATDVGHPMA 119
KRQCVG G A EQ+R+DCCRQLAAVDDSWCRC A++HM+GGIYRELGA DVGHPM+
Sbjct: 61 KRQCVGRGTAAAA--EQVRRDCCRQLAAVDDSWCRCEAISHMLGGIYRELGAPDVGHPMS 118
Query: 120 EVFPGCRRGDLERAAASLPAFCNVDIPNGTGGVCYWL 156
EVF GCRRGDLERAAASLPAFCNVDIPNG GGVCYWL
Sbjct: 119 EVFRGCRRGDLERAAASLPAFCNVDIPNGGGGVCYWL 155
>Os07g0214600 Similar to Seed allergenic protein RA17 precursor
Length = 157
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/156 (69%), Positives = 118/156 (75%), Gaps = 4/156 (2%)
Query: 1 MASNKXXXXXXXXXXXXXXXXXXTMADHHKDQVVYSLGERCQPGMGYPMYSLPRCRAVVK 60
MASNK TMADHH++QVVY+ G+ CQPG+GYP Y LPRCRA VK
Sbjct: 1 MASNKVVISALLVVVVSVLAATTTMADHHQEQVVYTPGQLCQPGIGYPTYPLPRCRAFVK 60
Query: 61 RQCVGHGAPGGAVDEQLRQDCCRQLAAVDDSWCRCSALNHMVGGIYRELGATDVGHPMAE 120
RQCV APG VDEQ+R+ CCRQLAA+D SWCRC ALNHM+ IYRE GA D GHPMAE
Sbjct: 61 RQCV---APG-TVDEQVRRGCCRQLAAIDSSWCRCDALNHMLRIIYRESGAADAGHPMAE 116
Query: 121 VFPGCRRGDLERAAASLPAFCNVDIPNGTGGVCYWL 156
VF GCRRGD+ERAAASLPAFCNVDIPNG GGVCYWL
Sbjct: 117 VFRGCRRGDIERAAASLPAFCNVDIPNGVGGVCYWL 152
>Os07g0213800 Similar to Allergenic protein
Length = 160
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/143 (70%), Positives = 114/143 (79%), Gaps = 6/143 (4%)
Query: 24 TMADHHKDQVVYSLGERCQPGMGYPMYSLPRCRAVVKRQCVGHGAPGGAVDEQLRQDCCR 83
TMADH + QVVY+ G+ C G GYPMY LPRCRA+ KRQC G GAVDEQ+RQDCCR
Sbjct: 24 TMADH-RGQVVYTPGQLCAAGRGYPMYPLPRCRALAKRQCAG-----GAVDEQVRQDCCR 77
Query: 84 QLAAVDDSWCRCSALNHMVGGIYRELGATDVGHPMAEVFPGCRRGDLERAAASLPAFCNV 143
QLAA+DDS+CRC AL+HM+ G+Y+ELGA G PM EVFPGCRRGD++R AASLPAFCNV
Sbjct: 78 QLAAIDDSFCRCPALSHMLVGMYKELGAPAKGQPMDEVFPGCRRGDMKRVAASLPAFCNV 137
Query: 144 DIPNGTGGVCYWLGYPRTPRTGH 166
DIP G GGVCYWL YP P TGH
Sbjct: 138 DIPIGIGGVCYWLSYPMNPATGH 160
>D43658
Length = 109
Score = 206 bits (523), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 101/109 (92%), Positives = 102/109 (93%), Gaps = 1/109 (0%)
Query: 58 VVKRQCVGHGAPGGAVDEQLRQDCCRQLAAVDDSWCRCSALNHMVGGIYRELGATDVGHP 117
VVKRQCV GGA DEQLRQDCCRQLAAVDDSWCRCSALNHMVGGIYRELGATDVGHP
Sbjct: 2 VVKRQCVATRRTGGA-DEQLRQDCCRQLAAVDDSWCRCSALNHMVGGIYRELGATDVGHP 60
Query: 118 MAEVFPGCRRGDLERAAASLPAFCNVDIPNGTGGVCYWLGYPRTPRTGH 166
MAEVFPGCRRGDLERA A+LPAFCNVDIPNGTGGVCYWLGYPRTPRTGH
Sbjct: 61 MAEVFPGCRRGDLERARATLPAFCNVDIPNGTGGVCYWLGYPRTPRTGH 109
>Os07g0213700
Length = 147
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 49 MYSLPRCRAVVKRQCVGHGAPGGAVDEQLRQDCCRQLAAVDDSWCRCSALNHMVGGIYRE 108
+Y LPRCR +VK QC+G GA G VDEQ+ +DCCRQLA ++++ CRC L+H + G+Y+E
Sbjct: 43 VYPLPRCRTMVKGQCIGGGA-AGNVDEQVWRDCCRQLATINNNLCRCPVLSHKLVGMYKE 101
Query: 109 LGATDVGHPMAEVFPGCRRGDLE-RAAASLPAFCNVDIPNGTGGVC 153
LG G PM EVFPGCRR +++ ASL A C VDI G GGVC
Sbjct: 102 LGTAAHGQPMDEVFPGCRRDNMKCMVVASLLALCGVDIHIGIGGVC 147
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,549,424
Number of extensions: 294055
Number of successful extensions: 550
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 6
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)