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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0214300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Seed allergenic protein RAG2 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0372) R2 : 0.000393
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0332 (0.0784) R2dN8 : 0.000507 R2N8 : 0.000393
σ : 0.701
deviance : 225.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
205.43 0.673 3.25 -0.275 0.444 -0.648 -0.679 -0.108 -0.00476 2.23 20.36 9 -- --
204.49 0.671 3.25 -0.285 0.428 -0.65 -0.724 -- -0.00301 2.14 20.33 7 -- --
205.06 0.672 3.25 -0.278 0.426 -0.637 -- -0.504 0.000122 2.38 20.14 7 -- --
206.43 0.674 3.25 -0.264 0.423 -0.641 -- -- 0.00112 2.35 20.14 7 -- --
210.31 0.679 3.24 -0.256 -- -0.382 -- -0.482 0.00886 -- 20.14 7 -- --
213.01 0.684 3.23 -0.26 0.392 -- 0.741 -- 0.00538 9.8 -- -- -- --
214.92 0.687 3.23 -0.234 0.398 -- -- -- 0.00519 9.24 -- -- -- --
211.56 0.68 3.24 -0.242 -- -0.386 -- -- 0.00971 -- 20.14 7 -- --
208.25 0.676 3.24 -- 0.406 -0.626 -- -- 0.0305 2.43 20.14 7 -- --
224.12 0.7 3.24 -0.236 -- -- -- -- 0.00703 -- -- -- -- --
216.37 0.688 3.23 -- 0.398 -- -- -- 0.0313 9.29 -- -- -- --
213.1 0.682 3.24 -- -- -0.385 -- -- 0.0365 -- 20.14 7 -- --
225.59 0.701 3.24 -- -- -- -- -- 0.0332 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.16 atmosphere 1015.0 270 < th dose dependent rect. 6 3
4 193.54 atmosphere 1015.0 270 < th dose dependent rect. 7 1
7 194.67 atmosphere 1015.0 10 < th dose dependent rect. 7 5
13 195.50 radiation 20.0 90 < th dose dependent rect. 23 13
16 195.78 radiation 20.0 90 < th dose dependent rect. 23 8
17 195.79 radiation 20.0 90 < th dose dependent rect. 23 10
26 196.30 radiation 10.0 90 < th dose independent rect. 23 8
33 196.54 radiation 1.0 10 > th dose dependent sin 8 NA
44 196.88 radiation 1.0 270 < th dose independent rect. 21 10
45 196.88 humidity 50.0 90 > th dose dependent rect. 23 8
48 196.98 radiation 1.0 270 < th dose independent rect. 21 18
49 196.99 atmosphere 1010.0 270 < th dose independent rect. 7 1
51 197.03 radiation 1.0 270 < th dose independent rect. 21 16
61 197.12 temperature 15.0 90 > th dose independent rect. 23 8
63 197.19 radiation 20.0 90 < th dose dependent sin 7 NA
66 197.27 wind 9.0 90 < th dose independent rect. 23 8
68 197.27 temperature 30.0 90 < th dose independent rect. 23 8
69 197.27 humidity 50.0 90 > th dose independent rect. 23 8
71 197.27 atmosphere 995.0 90 > th dose independent rect. 23 8
72 197.27 radiation 40.0 90 < th dose independent rect. 23 8
73 197.27 temperature 10.0 90 > th dose independent rect. 7 16
78 197.35 temperature 20.0 90 > th dose independent rect. 11 8
80 197.39 temperature 30.0 270 < th dose independent rect. 18 15
84 197.46 temperature 10.0 270 > th dose dependent rect. 10 19
85 197.47 atmosphere 1015.0 90 < th dose independent rect. 7 16
87 197.50 radiation 10.0 270 < th dose dependent rect. 21 9
88 197.52 wind 9.0 90 < th dose independent rect. 7 16
90 197.57 radiation 30.0 10 < th dose dependent sin 7 NA
94 197.61 humidity 60.0 270 > th dose independent rect. 18 15
101 197.67 radiation 1.0 270 < th dose dependent rect. 21 19
107 197.76 precipitation 0.1 90 < th dose independent rect. 23 8
110 197.76 precipitation 0.1 90 < th dose dependent rect. 23 8
115 197.78 radiation 1.0 270 < th dose dependent rect. 21 13
117 197.79 wind 5.0 10 < th dose dependent rect. 9 1
118 197.81 atmosphere 995.0 270 > th dose independent rect. 18 15
119 197.81 radiation 1.0 270 < th dose dependent rect. 21 11
122 197.86 wind 9.0 270 < th dose independent rect. 9 9
125 197.88 humidity 90.0 30 < th dose dependent rect. 20 14
133 197.95 radiation 40.0 90 < th dose independent rect. 11 8
134 197.96 wind 9.0 270 < th dose independent rect. 18 15
135 197.97 radiation 1.0 270 < th dose independent sin 9 NA
138 198.00 radiation 40.0 90 < th dose independent rect. 11 19
141 198.02 temperature 10.0 270 > th dose independent rect. 9 9
142 198.02 atmosphere 1015.0 270 < th dose independent rect. 9 9
143 198.02 temperature 10.0 270 > th dose independent rect. 18 15
147 198.03 precipitation 0.1 270 < th dose independent rect. 18 15
148 198.03 precipitation 0.1 270 < th dose dependent rect. 18 15
155 198.09 temperature 10.0 90 > th dose dependent rect. 23 7
158 198.11 precipitation 0.1 90 < th dose independent rect. 7 16
159 198.11 precipitation 0.1 90 < th dose dependent rect. 7 16
169 198.18 radiation 20.0 90 < th dose dependent rect. 23 16
190 198.21 temperature 10.0 10 > th dose dependent rect. 12 19
197 198.27 wind 9.0 90 < th dose independent rect. 11 8
207 198.36 radiation 1.0 270 > th dose independent sin 8 NA
212 198.37 atmosphere 1010.0 270 < th dose independent rect. 6 3
218 198.39 precipitation 0.1 270 < th dose independent rect. 9 9
219 198.39 radiation 40.0 270 < th dose independent rect. 18 15
220 198.39 precipitation 0.1 270 < th dose dependent rect. 9 9
221 198.41 temperature 10.0 90 > th dose independent rect. 11 8
222 198.41 atmosphere 1015.0 90 < th dose independent rect. 11 8
234 198.49 temperature 15.0 270 > th dose independent rect. 21 9
254 198.59 radiation 1.0 270 > th dose independent rect. 10 9
271 198.62 humidity 50.0 270 > th dose dependent rect. 21 8
276 198.64 temperature 30.0 270 < th dose independent rect. 21 9
277 198.64 humidity 50.0 270 > th dose independent rect. 21 9
280 198.64 atmosphere 995.0 270 > th dose independent rect. 21 9
286 198.64 wind 9.0 10 < th dose dependent rect. 7 5
291 198.66 radiation 1.0 10 > th dose dependent rect. 7 3
295 198.68 wind 9.0 270 < th dose independent rect. 21 9
335 198.82 wind 5.0 10 < th dose independent rect. 9 1
381 198.91 radiation 20.0 90 < th dose dependent rect. 23 18
395 198.98 radiation 1.0 30 > th dose dependent rect. 9 1
399 198.99 atmosphere 1000.0 90 > th dose dependent rect. 19 4
437 199.10 atmosphere 1000.0 270 > th dose dependent rect. 19 1
439 199.12 precipitation 0.1 270 < th dose independent rect. 21 9
440 199.12 precipitation 0.1 270 < th dose dependent rect. 21 9
443 199.14 radiation 1.0 270 > th dose independent rect. 5 5
464 199.18 radiation 10.0 10 > th dose independent sin 7 NA
467 199.19 temperature 30.0 90 < th dose dependent rect. 19 4
477 199.24 wind 1.0 90 > th dose independent rect. 11 8
479 199.24 atmosphere 995.0 90 > th dose independent rect. 7 16
488 199.28 wind 9.0 90 < th dose dependent rect. 23 8
491 199.30 atmosphere 1005.0 270 > th dose dependent rect. 17 3
503 199.36 temperature 10.0 270 > th dose dependent rect. 21 9
519 199.43 wind 3.0 10 < th dose dependent rect. 7 3
520 199.44 precipitation 0.1 270 < th dose independent rect. 7 1
521 199.44 humidity 90.0 10 < th dose independent rect. 7 5
523 199.44 precipitation 0.1 270 < th dose dependent rect. 7 1
542 199.54 temperature 15.0 270 > th dose independent rect. 8 23
543 199.55 radiation 1.0 270 > th dose independent rect. 7 1
544 199.55 wind 9.0 270 < th dose independent rect. 8 23
547 199.56 wind 7.0 270 < th dose independent rect. 7 1
548 199.56 wind 1.0 270 > th dose independent rect. 9 9
553 199.58 radiation 40.0 270 < th dose independent rect. 7 1
560 199.58 atmosphere 1015.0 90 < th dose independent rect. 23 8
567 199.59 temperature 10.0 270 > th dose independent rect. 7 1
569 199.59 temperature 30.0 270 < th dose independent rect. 7 1
570 199.59 humidity 50.0 270 > th dose independent rect. 7 1
572 199.59 atmosphere 995.0 270 > th dose independent rect. 7 1
593 199.62 radiation 10.0 30 > th dose independent rect. 9 1
600 199.63 radiation 1.0 10 > th dose dependent rect. 14 22
632 199.70 temperature 30.0 270 < th dose dependent rect. 19 1
657 199.79 temperature 20.0 30 > th dose independent rect. 9 1
667 199.82 radiation 1.0 90 > th dose dependent rect. 4 6
685 199.84 wind 7.0 270 < th dose independent rect. 5 5
687 199.85 precipitation 0.1 270 < th dose independent rect. 5 5
691 199.85 wind 9.0 270 < th dose independent rect. 10 19
692 199.85 precipitation 0.1 270 < th dose dependent rect. 5 5
695 199.86 temperature 10.0 270 > th dose dependent rect. 10 8
698 199.88 temperature 15.0 270 > th dose independent rect. 5 5
703 199.89 humidity 50.0 270 > th dose independent rect. 5 5
713 199.91 atmosphere 995.0 270 > th dose independent rect. 5 5
715 199.91 temperature 10.0 270 > th dose independent rect. 10 19
727 199.92 wind 5.0 10 < th dose independent rect. 7 5
732 199.93 atmosphere 1015.0 90 < th dose independent rect. 19 16
746 200.00 wind 5.0 10 < th dose independent rect. 12 19
759 200.05 radiation 20.0 90 < th dose dependent rect. 23 20
815 200.17 humidity 90.0 10 < th dose independent rect. 7 3
817 200.17 humidity 90.0 90 < th dose independent rect. 6 5
824 200.19 wind 1.0 270 > th dose independent rect. 22 7
834 200.22 humidity 90.0 270 < th dose independent rect. 10 7
838 200.23 wind 9.0 10 < th dose dependent rect. 7 8
839 200.23 temperature 10.0 30 > th dose dependent rect. 10 23
841 200.24 wind 9.0 270 < th dose independent rect. 9 21
844 200.26 radiation 20.0 10 > th dose independent rect. 7 3
847 200.26 radiation 1.0 10 > th dose independent rect. 7 5
861 200.26 wind 9.0 270 < th dose dependent rect. 5 5
864 200.27 temperature 30.0 270 < th dose independent rect. 6 3
865 200.27 precipitation 0.1 270 < th dose independent rect. 6 3
866 200.27 precipitation 0.1 270 < th dose dependent rect. 6 3
874 200.31 wind 9.0 270 < th dose independent rect. 6 3
875 200.31 temperature 10.0 270 > th dose independent rect. 6 3
877 200.31 humidity 50.0 270 > th dose independent rect. 6 3
878 200.31 atmosphere 995.0 270 > th dose independent rect. 6 3
883 200.31 temperature 10.0 270 > th dose independent rect. 9 21
884 200.31 atmosphere 1010.0 90 < th dose dependent rect. 9 2
887 200.32 atmosphere 995.0 270 > th dose independent rect. 10 7
889 200.33 atmosphere 1000.0 90 > th dose independent rect. 10 9
903 200.36 wind 9.0 270 < th dose dependent rect. 7 1
904 200.36 radiation 30.0 10 < th dose dependent rect. 23 10
909 200.38 temperature 10.0 1440 > th dose independent rect. 11 9
912 200.38 temperature 10.0 1440 > th dose independent rect. 20 15
915 200.38 atmosphere 995.0 1440 > th dose independent rect. 20 15
917 200.38 temperature 10.0 270 > th dose dependent rect. 7 1
918 200.38 atmosphere 995.0 270 > th dose dependent rect. 17 5
920 200.39 radiation 20.0 10 < th dose independent sin 9 NA
921 200.39 humidity 90.0 90 < th dose independent rect. 19 15
935 200.43 radiation 10.0 10 < th dose independent sin 7 NA
936 200.43 temperature 10.0 1440 > th dose independent rect. 24 8
939 200.43 temperature 30.0 1440 < th dose independent rect. 24 8
943 200.43 humidity 50.0 1440 > th dose independent rect. 24 8
948 200.43 atmosphere 995.0 1440 > th dose independent rect. 24 8
951 200.43 temperature 10.0 1440 > th dose independent rect. 8 16
956 200.44 radiation 30.0 270 < th dose dependent rect. 15 8
958 200.46 wind 9.0 10 < th dose independent rect. 7 5
981 200.49 radiation 10.0 270 < th dose independent rect. 16 7
996 200.51 wind 9.0 10 < th dose independent rect. 12 19