BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0204100 Os07g0204100|J090040E21
         (224 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0204100  Conserved hypothetical protein                      226   7e-60

>Os07g0204100 Conserved hypothetical protein
          Length = 224

 Score =  226 bits (577), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 127/224 (56%), Positives = 127/224 (56%)

Query: 1   MEKGGASVXXXXXXXXXXXXXEVLPDQLXXXXXXXXXXXRRVLGAQETEESNLXXXXXXX 60
           MEKGGASV             EVLPDQL           RRVLGAQETEESNL       
Sbjct: 1   MEKGGASVSMDAAASMDMWDWEVLPDQLSSSSHGGGGHGRRVLGAQETEESNLDAAAADM 60

Query: 61  XXXXECKDIGVDVAVPAETKTSQXXXXXXXXXXXXXXXXFQGSXXXXXXXXXXXXXXXXX 120
               ECKDIGVDVAVPAETKTSQ                FQGS                 
Sbjct: 61  AVDDECKDIGVDVAVPAETKTSQEETMAAKVTEEEEEEAFQGSDAKVVDGDDDGGGEEEE 120

Query: 121 XXXXXXXXXXXXCVVFRVGKLRVNGIGALCSFGVAAAATVCVFLVGGRXXXXXXXXXXXX 180
                       CVVFRVGKLRVNGIGALCSFGVAAAATVCVFLVGGR            
Sbjct: 121 EEEEEGKKAGAECVVFRVGKLRVNGIGALCSFGVAAAATVCVFLVGGRLQHHHRQQQQHK 180

Query: 181 XXXXXYGDDKVNLVTHFQSYVSTFYQIHHQSFSFVYGRLLFFLI 224
                YGDDKVNLVTHFQSYVSTFYQIHHQSFSFVYGRLLFFLI
Sbjct: 181 IQLQLYGDDKVNLVTHFQSYVSTFYQIHHQSFSFVYGRLLFFLI 224



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,890,512
Number of extensions: 81311
Number of successful extensions: 168
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)