BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0195400 Os07g0195400|AK069901
(562 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0195400 Phosphoglucomutase/phosphomannomutase family p... 1063 0.0
>Os07g0195400 Phosphoglucomutase/phosphomannomutase family protein
Length = 562
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/537 (97%), Positives = 523/537 (97%)
Query: 26 DGARFSYGTAGFRAEGAAMGPAVCRAGVVAALRSAKLGGAAVGVVITASHNPVRDNGVKI 85
DGARFSYGTAGFRAEGAAMGPAVCRAGVVAALRSAKLGGAAVGVVITASHNPVRDNGVKI
Sbjct: 26 DGARFSYGTAGFRAEGAAMGPAVCRAGVVAALRSAKLGGAAVGVVITASHNPVRDNGVKI 85
Query: 86 VDADGGMLSQDWEPFXXXXXXXXXXXXXXQIVLQFAKDEDIKLGGSHSAQVLLARDTRPT 145
VDADGGMLSQDWEPF QIVLQFAKDEDIKLGGSHSAQVLLARDTRPT
Sbjct: 86 VDADGGMLSQDWEPFADALANAPNPDALLQIVLQFAKDEDIKLGGSHSAQVLLARDTRPT 145
Query: 146 GEYLLDVAVKGVNAVIGAVAVDMGILTTPQLHWMVRSKNKGLKSSETDYFSQVIDSFRCL 205
GEYLLDVAVKGVNAVIGAVAVDMGILTTPQLHWMVRSKNKGLKSSETDYFSQVIDSFRCL
Sbjct: 146 GEYLLDVAVKGVNAVIGAVAVDMGILTTPQLHWMVRSKNKGLKSSETDYFSQVIDSFRCL 205
Query: 206 LELVPKDKEADVINNRLIVDGANGIGGLKLEEIKAKISGLDIHVRNSGKGEGILNESCGA 265
LELVPKDKEADVINNRLIVDGANGIGGLKLEEIKAKISGLDIHVRNSGKGEGILNESCGA
Sbjct: 206 LELVPKDKEADVINNRLIVDGANGIGGLKLEEIKAKISGLDIHVRNSGKGEGILNESCGA 265
Query: 266 DFVQKEKVVPLGFGPEDVGFRCASFDGDADRLVYFRIVSSSDTRIDLVDGDKILSLFVLF 325
DFVQKEKVVPLGFGPEDVGFRCASFDGDADRLVYFRIVSSSDTRIDLVDGDKILSLFVLF
Sbjct: 266 DFVQKEKVVPLGFGPEDVGFRCASFDGDADRLVYFRIVSSSDTRIDLVDGDKILSLFVLF 325
Query: 326 IREQLDIINGKDNKGNEVLPTRFGVIQTAYANGASTDFLKNIGLEVVFTPTGVKYLHKEA 385
IREQLDIINGKDNKGNEVLPTRFGVIQTAYANGASTDFLKNIGLEVVFTPTGVKYLHKEA
Sbjct: 326 IREQLDIINGKDNKGNEVLPTRFGVIQTAYANGASTDFLKNIGLEVVFTPTGVKYLHKEA 385
Query: 386 LKYDIGIYFEANGHGTVLFSDHFVSQLESLTSEFSSKAAGSSQHQAAMRLLATSQLINQA 445
LKYDIGIYFEANGHGTVLFSDHFVSQLESLTSEFSSKAAGSSQHQAAMRLLATSQLINQA
Sbjct: 386 LKYDIGIYFEANGHGTVLFSDHFVSQLESLTSEFSSKAAGSSQHQAAMRLLATSQLINQA 445
Query: 446 VGDALSGMLLVEAVLQYKGWSFQNWCDLYTDLPSRQLKVKVQDRNSIVTTDAERRVCQPN 505
VGDALSGMLLVEAVLQYKGWSFQNWCDLYTDLPSRQLKVKVQDRNSIVTTDAERRVCQPN
Sbjct: 446 VGDALSGMLLVEAVLQYKGWSFQNWCDLYTDLPSRQLKVKVQDRNSIVTTDAERRVCQPN 505
Query: 506 GLQELIDGEISNYSHGRCFVRPSGTEDVVRVYAEASSEEAADCLAKRVAQHVERILG 562
GLQELIDGEISNYSHGRCFVRPSGTEDVVRVYAEASSEEAADCLAKRVAQHVERILG
Sbjct: 506 GLQELIDGEISNYSHGRCFVRPSGTEDVVRVYAEASSEEAADCLAKRVAQHVERILG 562
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,336,604
Number of extensions: 727267
Number of successful extensions: 1485
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1485
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 456
Effective length of database: 11,501,117
Effective search space: 5244509352
Effective search space used: 5244509352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)