Os07g0195400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphoglucomutase/phosphomannomutase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0195400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Phosphoglucomutase/phosphomannomutase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.91 | 0.278 | 8.72 | 0.12 | 0.251 | -0.637 | -0.00826 | 1.25 | -0.0835 | 2.91 | 23.24 | 1085 | -- | -- |
| 36.86 | 0.283 | 8.7 | 0.33 | 0.246 | -0.726 | -0.123 | -- | -0.0466 | 3.74 | 22.96 | 984 | -- | -- |
| 34.91 | 0.275 | 8.72 | 0.125 | 0.252 | -0.642 | -- | 1.24 | -0.0804 | 2.92 | 23.1 | 1077 | -- | -- |
| 36.49 | 0.281 | 8.7 | 0.276 | 0.248 | -0.925 | -- | -- | -0.0429 | 2.77 | 22.24 | 1147 | -- | -- |
| 38.42 | 0.289 | 8.72 | 0.125 | -- | -0.733 | -- | 1.15 | -0.087 | -- | 23.18 | 1048 | -- | -- |
| 45.04 | 0.315 | 8.67 | 0.517 | 0.303 | -- | -0.245 | -- | 0.0842 | 2.54 | -- | -- | -- | -- |
| 45.26 | 0.315 | 8.67 | 0.523 | 0.302 | -- | -- | -- | 0.0857 | 2.47 | -- | -- | -- | -- |
| 39.81 | 0.294 | 8.7 | 0.267 | -- | -0.983 | -- | -- | -0.0492 | -- | 22.4 | 1064 | -- | -- |
| 37.71 | 0.286 | 8.71 | -- | 0.259 | -0.987 | -- | -- | -0.0866 | 2.49 | 20.61 | 2609 | -- | -- |
| 50.63 | 0.332 | 8.67 | 0.536 | -- | -- | -- | -- | 0.0932 | -- | -- | -- | -- | -- |
| 52.47 | 0.339 | 8.68 | -- | 0.312 | -- | -- | -- | 0.0274 | 2.49 | -- | -- | -- | -- |
| 41.4 | 0.3 | 8.71 | -- | -- | -1.16 | -- | -- | -0.0825 | -- | 22.03 | 1080 | -- | -- |
| 58.21 | 0.356 | 8.68 | -- | -- | -- | -- | -- | 0.0337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.26 | temperature | 20 | 720 | < th | dose dependent | rect. | 12 | 17 |
| 2 | 34.35 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 15 | 34.54 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 30 | 34.68 | temperature | 15 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 37 | 34.74 | temperature | 20 | 720 | < th | dose dependent | sin | 16 | NA |
| 78 | 35.10 | temperature | 15 | 4320 | < th | dose dependent | sin | 4 | NA |
| 95 | 35.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 107 | 35.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 126 | 35.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 165 | 35.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 167 | 35.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 173 | 35.43 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 19 |
| 198 | 35.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 200 | 35.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 277 | 35.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 288 | 35.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 312 | 35.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 352 | 35.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 464 | 35.87 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 517 | 35.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 520 | 35.94 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 555 | 35.97 | temperature | 15 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 570 | 35.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 603 | 36.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 659 | 36.04 | temperature | 15 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 680 | 36.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 687 | 36.06 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 743 | 36.10 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 6 |
| 769 | 36.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 770 | 36.12 | temperature | 15 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 783 | 36.13 | temperature | 15 | 1440 | < th | dose independent | sin | 1 | NA |
| 784 | 36.13 | temperature | 15 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 789 | 36.13 | temperature | 15 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 790 | 36.13 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 801 | 36.13 | temperature | 15 | 1440 | < th | dose dependent | rect. | 4 | 11 |
| 816 | 36.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 909 | 36.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |