BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0187200 Os07g0187200|AK065328
         (106 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0187200  FAD linked oxidase, N-terminal domain containi...   213   2e-56

>Os07g0187200 FAD linked oxidase, N-terminal domain containing protein
          Length = 106

 Score =  213 bits (542), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   FVILVTPVCVFVRSIYDYFYCKERKLKILYHLFRFIMPLDLGAKGSCHIGGNISTNAGGL 60
           FVILVTPVCVFVRSIYDYFYCKERKLKILYHLFRFIMPLDLGAKGSCHIGGNISTNAGGL
Sbjct: 1   FVILVTPVCVFVRSIYDYFYCKERKLKILYHLFRFIMPLDLGAKGSCHIGGNISTNAGGL 60

Query: 61  RFIRYGSLHGSVLGLEVVLADGTVLDMLTTLRKDNTGYDLKHLFIG 106
           RFIRYGSLHGSVLGLEVVLADGTVLDMLTTLRKDNTGYDLKHLFIG
Sbjct: 61  RFIRYGSLHGSVLGLEVVLADGTVLDMLTTLRKDNTGYDLKHLFIG 106



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.150    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,615,834
Number of extensions: 138702
Number of successful extensions: 451
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 17,035,801
Length adjustment: 74
Effective length of query: 32
Effective length of database: 13,171,965
Effective search space: 421502880
Effective search space used: 421502880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)