BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0167000 Os07g0167000|AK106535
(404 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0167000 Similar to EIF3e 842 0.0
Os07g0222300 Similar to EIF3e 706 0.0
Os07g0503700 Similar to EIF3e 615 e-176
AK108492 318 5e-87
>Os07g0167000 Similar to EIF3e
Length = 404
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/404 (100%), Positives = 404/404 (100%)
Query: 1 RGGGEAAMAEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDY 60
RGGGEAAMAEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDY
Sbjct: 1 RGGGEAAMAEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDY 60
Query: 61 AMDIHKSRYGTDDVPEAIDNIHQNQQIGPDQIETLYQYAKFQFDCGNYSFAAQYLHQYRA 120
AMDIHKSRYGTDDVPEAIDNIHQNQQIGPDQIETLYQYAKFQFDCGNYSFAAQYLHQYRA
Sbjct: 61 AMDIHKSRYGTDDVPEAIDNIHQNQQIGPDQIETLYQYAKFQFDCGNYSFAAQYLHQYRA 120
Query: 121 LCTNIERSLSALWGKLAAEILMQNWDVALEELNRLKEIIDSKNFSSPLNQLQNRIWLMHW 180
LCTNIERSLSALWGKLAAEILMQNWDVALEELNRLKEIIDSKNFSSPLNQLQNRIWLMHW
Sbjct: 121 LCTNIERSLSALWGKLAAEILMQNWDVALEELNRLKEIIDSKNFSSPLNQLQNRIWLMHW 180
Query: 181 SIFIFYNHENGRNGIIDLFFQERYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVI 240
SIFIFYNHENGRNGIIDLFFQERYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVI
Sbjct: 181 SIFIFYNHENGRNGIIDLFFQERYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVI 240
Query: 241 QQEQHSYKDPITEFLECLFVNYDFDGAQQKLIECEEVILNDPFLGKRIEEGNSITVPLRD 300
QQEQHSYKDPITEFLECLFVNYDFDGAQQKLIECEEVILNDPFLGKRIEEGNSITVPLRD
Sbjct: 241 QQEQHSYKDPITEFLECLFVNYDFDGAQQKLIECEEVILNDPFLGKRIEEGNSITVPLRD 300
Query: 301 EFLENARLFIFETYCRIHRSIDIGMLSQKLNMRYDEGELWIMNLVRNSKLDAKIDSVSGT 360
EFLENARLFIFETYCRIHRSIDIGMLSQKLNMRYDEGELWIMNLVRNSKLDAKIDSVSGT
Sbjct: 301 EFLENARLFIFETYCRIHRSIDIGMLSQKLNMRYDEGELWIMNLVRNSKLDAKIDSVSGT 360
Query: 361 LIMTTNHVNIHEQFIESLKNLNMRTSMLAKNIVEPAQAMQQATR 404
LIMTTNHVNIHEQFIESLKNLNMRTSMLAKNIVEPAQAMQQATR
Sbjct: 361 LIMTTNHVNIHEQFIESLKNLNMRTSMLAKNIVEPAQAMQQATR 404
>Os07g0222300 Similar to EIF3e
Length = 439
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/430 (81%), Positives = 369/430 (85%), Gaps = 42/430 (9%)
Query: 8 MAEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHKS 67
MAEHDLTARMAG +DCHLV PLLEFLQER LY +EILEAK+RLL GTNMVDYAMDIHKS
Sbjct: 1 MAEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHKS 60
Query: 68 RYGTDDVPE--------------AID-------------------------NIHQNQ--- 85
+ TD+VP+ A+D N+H Q
Sbjct: 61 LHDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQLVQELRPDKQYNLHMLQDRF 120
Query: 86 QIGPDQIETLYQYAKFQFDCGNYSFAAQYLHQYRALCTNIERSLSALWGKLAAEILMQNW 145
QIGP+QIETLYQ+AKFQFDCGNYS AA YL+QYRALCTN ERSLSALWGKLAAEILMQNW
Sbjct: 121 QIGPEQIETLYQFAKFQFDCGNYSDAAVYLYQYRALCTNSERSLSALWGKLAAEILMQNW 180
Query: 146 DVALEELNRLKEIIDSKNFSSPLNQLQNRIWLMHWSIFIFYNHENGRNGIIDLFFQERYL 205
DVAL+ELNRLKEIIDSKNFSSPLNQLQNRIWLMHWSIFIF+NHENGRNGIIDLFFQ+RYL
Sbjct: 181 DVALDELNRLKEIIDSKNFSSPLNQLQNRIWLMHWSIFIFFNHENGRNGIIDLFFQDRYL 240
Query: 206 NAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSYKDPITEFLECLFVNYDFD 265
NAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSYKDPITEFLECL+VNYDFD
Sbjct: 241 NAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSYKDPITEFLECLYVNYDFD 300
Query: 266 GAQQKLIECEEVILNDPFLGKRIEEGNSITVPLRDEFLENARLFIFETYCRIHRSIDIGM 325
GAQQKLIECE+VILNDPFLGKRIEEGN +TVPLRDEFLENARLFIFETYCRIHR IDIGM
Sbjct: 301 GAQQKLIECEQVILNDPFLGKRIEEGNFVTVPLRDEFLENARLFIFETYCRIHRCIDIGM 360
Query: 326 LSQKLNMRYDEGELWIMNLVRNSKLDAKIDSVSGTLIMTTNHVNIHEQFIESLKNLNMRT 385
LSQKLNM YDE ELWIMNLVRNSKLDAKIDSVSGTLIMTTNHVNIHEQ IESLKNLNMRT
Sbjct: 361 LSQKLNMSYDEAELWIMNLVRNSKLDAKIDSVSGTLIMTTNHVNIHEQVIESLKNLNMRT 420
Query: 386 SMLAKNIVEP 395
+LAKNIVEP
Sbjct: 421 FLLAKNIVEP 430
>Os07g0503700 Similar to EIF3e
Length = 436
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 311/436 (71%), Positives = 343/436 (78%), Gaps = 47/436 (10%)
Query: 8 MAEHDLTARMAGHLDCHLVLPLLEFLQER--HLYPEEEILEAKIRLL-RGTNMVDYAMDI 64
MAEHDLTARMA H++CHLV PLLEFLQ R +Y EEIL+AK+RLL +GTNMVDYAMD
Sbjct: 1 MAEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDT 60
Query: 65 HKSRYGTD--------------------------------------------DVPEAIDN 80
HK +G D I
Sbjct: 61 HKLLHGDTDDDVVVPVPDDMVERRHEVVTRLGALAAPAAPIVSALKNHHLGPDKEHNIRM 120
Query: 81 IHQNQQIGPDQIETLYQYAKFQFDCGNYSFAAQYLHQYRALCTNIERSLSALWGKLAAEI 140
+H+ QIGPDQIE LYQYAKFQFDCGNY AA+ LH+YRALCT+ ERSLSA WGKL+AEI
Sbjct: 121 LHERFQIGPDQIEALYQYAKFQFDCGNYPDAAENLHRYRALCTSSERSLSAQWGKLSAEI 180
Query: 141 LMQNWDVALEELNRLKEIIDSKNFSSPLNQLQNRIWLMHWSIFIFYNHENGRNGIIDLFF 200
L NWDVALEELN LKE+IDSKN SSPLNQLQNRIWLMH SIFIF+NH NG GIIDLFF
Sbjct: 181 LNNNWDVALEELNCLKEMIDSKNSSSPLNQLQNRIWLMHCSIFIFFNHGNGSYGIIDLFF 240
Query: 201 QERYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSYKDPITEFLECLFV 260
Q++YLNAIQT+APHLLRYLA A+VVN+RRRNMLKEL+KVIQQEQHSYKDPITEFLECL+V
Sbjct: 241 QDKYLNAIQTDAPHLLRYLAAAIVVNRRRRNMLKELVKVIQQEQHSYKDPITEFLECLYV 300
Query: 261 NYDFDGAQQKLIECEEVILNDPFLGKRIEEGNSITVPLRDEFLENARLFIFETYCRIHRS 320
N+DFDGAQQKLIECE+VILNDPFLGKRIEEGNSITVPLRDEFLENARL IFE+YCRIHR
Sbjct: 301 NHDFDGAQQKLIECEQVILNDPFLGKRIEEGNSITVPLRDEFLENARLLIFESYCRIHRC 360
Query: 321 IDIGMLSQKLNMRYDEGELWIMNLVRNSKLDAKIDSVSGTLIMTTNHVNIHEQFIESLKN 380
I IGMLS+KL M Y+E ELWIMNLV NSKLDAKID+ SGTLIMT NH NIH+QFIESLKN
Sbjct: 361 IHIGMLSEKLKMSYNEAELWIMNLVSNSKLDAKIDTASGTLIMTANHANIHQQFIESLKN 420
Query: 381 LNMRTSMLAKNIVEPA 396
L+MRT MLAK+ +EPA
Sbjct: 421 LDMRTFMLAKSTMEPA 436
>AK108492
Length = 445
Score = 318 bits (814), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/435 (38%), Positives = 256/435 (58%), Gaps = 62/435 (14%)
Query: 10 EHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHKSRY 69
++DL R+ +LD HLV PLLEF + E EI AK LL+ TNM DY ++ K
Sbjct: 23 QYDLLPRLIPYLDRHLVFPLLEF-SAGNDEDENEITRAKYELLKHTNMTDYVANLWKEIN 81
Query: 70 GTDDVP-------------------------------EAIDNIHQNQQ-----------I 87
+D +P E + N+ ++ +
Sbjct: 82 NSDSIPDEFVKKREEVLAKLQHYQDQSEKITELLQDDEVVGNLRSDKAANLRFLEEQHGV 141
Query: 88 GPDQIETLYQYAKFQFDCGNYSFAAQYLHQYRALCTNIERSLSALWGKLAAEILMQNWDV 147
+ + +LY Y +FQ+ CG+Y AA+ L+Q+R L T+ ++ SA WG+LA+EIL NW+
Sbjct: 142 TNEMVNSLYDYGRFQYSCGSYGNAAELLYQFRVLSTDNDKVASATWGRLASEILTTNWEG 201
Query: 148 ALEELNRLKEIIDSKNFSSPLNQLQNRIWLMHWSIFIFYNHENGRNGIIDLFFQERYLNA 207
A+EE+ ++K+ I+++ F++PL QL NR WL+HWS+F F+NH+ R+ + DLFF Y+N
Sbjct: 202 AMEEVQKVKDSIETRLFNNPLGQLTNRSWLIHWSLFPFFNHDPARDVLTDLFFSPAYINT 261
Query: 208 IQTNAPHLLRYLATAVVVNKRR--------RNMLKELIKVIQQEQHSYKDPITEFLECLF 259
IQT+ P +LRYLA AV+ N+ R + LK+LI+V++QE + Y DPIT+F++ L+
Sbjct: 262 IQTSCPWVLRYLAAAVITNRSRPHKHNGAYQKQLKDLIRVVRQEDYEYTDPITDFVKALY 321
Query: 260 VNYDFDGAQQKLIECEEVILNDPFLGKRIEEGNSITVPLRDEFLENARLFIFETYCRIHR 319
V++DF+ AQ+KL E EEV+ +D FL V D F+E AR I E+YC+IH+
Sbjct: 322 VDFDFEEAQKKLGEAEEVLRSDFFL-----------VSAADSFVEAARHLISESYCKIHQ 370
Query: 320 SIDIGMLSQKLNMRYDEGELWIMNLVRNSKLDAKIDSVSGTLIMTTNHVNIHEQFIESLK 379
IDI LS +L + DEGE WI+NL+R++++DAKID GT+IM ++++Q IE K
Sbjct: 371 RIDIKDLSTRLGLNQDEGEKWIVNLIRDTRVDAKIDYQEGTVIMNHPPQSVYQQVIEKTK 430
Query: 380 NLNMRTSMLAKNIVE 394
RT +L+ + +
Sbjct: 431 GAFFRTQVLSSAVAK 445
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,811,097
Number of extensions: 514812
Number of successful extensions: 1089
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1085
Number of HSP's successfully gapped: 5
Length of query: 404
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 301
Effective length of database: 11,657,759
Effective search space: 3508985459
Effective search space used: 3508985459
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)