BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0165700 Os07g0165700|AK106262
         (317 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0165700  Conserved hypothetical protein                      442   e-124

>Os07g0165700 Conserved hypothetical protein
          Length = 317

 Score =  442 bits (1138), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/317 (71%), Positives = 228/317 (71%)

Query: 1   MGNSCSSVDESXXXXXXXXXXXXXXXRETVADEFXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGNSCSSVDES               RETVADEF                          
Sbjct: 1   MGNSCSSVDESAAAIATLAESAAAGARETVADEFARAAGSGAGGRGDVAGSAAAGVASGA 60

Query: 61  XXXXXXXXDEVVIAGVLSLADGQKXXXXXXISGVESMQSYMRGTRFFCFGERVCSDQXXX 120
                   DEVVIAGVLSLADGQK      ISGVESMQSYMRGTRFFCFGERVCSDQ   
Sbjct: 61  GGRDDAAGDEVVIAGVLSLADGQKAAAAGAISGVESMQSYMRGTRFFCFGERVCSDQMAA 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPDVENPLHDIPEDRPDYMLSAAATGARA 180
                                          NPDVENPLHDIPEDRPDYMLSAAATGARA
Sbjct: 121 LKMAAACGSAAGMRAVAMVAARARHAARIAANPDVENPLHDIPEDRPDYMLSAAATGARA 180

Query: 181 GVLCARMKIQAAGGDSTSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSIS 240
           GVLCARMKIQAAGGDSTSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSIS
Sbjct: 181 GVLCARMKIQAAGGDSTSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSIS 240

Query: 241 LGFFAACTGTVSGLLGTSSATFQYSRFAAITTFTAVWFLFSFAMTSVFSKTWRKILCGFI 300
           LGFFAACTGTVSGLLGTSSATFQYSRFAAITTFTAVWFLFSFAMTSVFSKTWRKILCGFI
Sbjct: 241 LGFFAACTGTVSGLLGTSSATFQYSRFAAITTFTAVWFLFSFAMTSVFSKTWRKILCGFI 300

Query: 301 CGVPGVTFVGAWLYSGW 317
           CGVPGVTFVGAWLYSGW
Sbjct: 301 CGVPGVTFVGAWLYSGW 317



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,916,599
Number of extensions: 269852
Number of successful extensions: 634
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)