BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0165000 Os07g0165000|AK106594
         (377 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0165000  Similar to Prolyl-tRNA synthetase                   782   0.0  
Os12g0443700  Similar to Glu-prolyl-tRNA aminoacyl synthetas...   320   1e-87

>Os07g0165000 Similar to Prolyl-tRNA synthetase
          Length = 377

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   VRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTKPFIRTLEFLWQEGHTAHAT 60
           VRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTKPFIRTLEFLWQEGHTAHAT
Sbjct: 1   VRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTKPFIRTLEFLWQEGHTAHAT 60

Query: 61  LEEAEKEAMQMIDVYTKFAYEQAAIPVIPGRKSRVETFAGANRTYTIEAMMGDRKALQAG 120
           LEEAEKEAMQMIDVYTKFAYEQAAIPVIPGRKSRVETFAGANRTYTIEAMMGDRKALQAG
Sbjct: 61  LEEAEKEAMQMIDVYTKFAYEQAAIPVIPGRKSRVETFAGANRTYTIEAMMGDRKALQAG 120

Query: 121 TSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAISTRFVGGIIMTHGDDAGLMLPPNIAP 180
           TSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAISTRFVGGIIMTHGDDAGLMLPPNIAP
Sbjct: 121 TSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAISTRFVGGIIMTHGDDAGLMLPPNIAP 180

Query: 181 IQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFYEMKGVPI 240
           IQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFYEMKGVPI
Sbjct: 181 IQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFYEMKGVPI 240

Query: 241 RLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASLLQKAIAF 300
           RLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASLLQKAIAF
Sbjct: 241 RLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASLLQKAIAF 300

Query: 301 RDSNIVDVSSYGELKEAIAEGKWARGPWSASDADELKVKEETSATIRCFPFEQPEGAKKC 360
           RDSNIVDVSSYGELKEAIAEGKWARGPWSASDADELKVKEETSATIRCFPFEQPEGAKKC
Sbjct: 301 RDSNIVDVSSYGELKEAIAEGKWARGPWSASDADELKVKEETSATIRCFPFEQPEGAKKC 360

Query: 361 FMTGNPAEEVAIFAKSY 377
           FMTGNPAEEVAIFAKSY
Sbjct: 361 FMTGNPAEEVAIFAKSY 377



>Os12g0443700 Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment)
          Length = 510

 Score =  320 bits (820), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/386 (41%), Positives = 239/386 (61%), Gaps = 15/386 (3%)

Query: 1   VRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRT-KPFIRTLEFLWQEGHTAHA 59
           +RPTSET++   F+KWI+S+RDLPL  NQW NV RWE     PFIR+ EFLWQEGHTA A
Sbjct: 131 IRPTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 190

Query: 60  TLEEAEKEAMQMIDVYTKFAYEQAAIPVIPGRKSRVETFAGANRTYTIEAMMGDR-KALQ 118
           T EEA++E +Q++++Y +   E  A+PV  GRKS +E FAG   T ++EA + +  + +Q
Sbjct: 191 TKEEADEEVLQILELYRRIYEEFLAVPVSKGRKSEMEKFAGGLYTTSVEAFIPNTGRGVQ 250

Query: 119 AGTSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAISTRFVGGIIMTHGDDAGLMLPPNI 178
             TSH LGQNF++ F   F ++      VWQ SWA +TR +G ++MTHGDD GL+LPP +
Sbjct: 251 GATSHCLGQNFAKMFDITFENDKGSRSMVWQNSWAYTTRSIGVMVMTHGDDKGLVLPPRV 310

Query: 179 APIQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFYEMKGV 238
           AP+QV+++P+  K  + +A++        TL++AGIR  +D  E  +PGWK++ +EMKGV
Sbjct: 311 APLQVIVIPVPYKDVDTTAIVNECKKTVETLEKAGIRADLDTRENYSPGWKYSHWEMKGV 370

Query: 239 PIRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASLLQKAI 298
           P+R+EIGP+D+ N    + RRD   K        +  + LV+ + G L E+Q +L + A 
Sbjct: 371 PLRIEIGPKDMANNQARVVRRDNGAK------ADIPTADLVEKVNGLLDEVQKNLFETAK 424

Query: 299 AFRDSNIVDVSSYGELKEAIAEGKWARGPWSASDADELKVKEET-----SATIRCFPFEQ 353
             RD+ +  V+++ E   A+ + K    PW   +  E  VK  T     +A   C PFEQ
Sbjct: 425 QKRDACLKVVNTWDEFIVALNDKKLILAPWCDEEEVEKDVKARTKGDLGAAKTLCTPFEQ 484

Query: 354 PE--GAKKCFMTGNPAEEVAIFAKSY 377
           P+      CF +G PA++ + + +SY
Sbjct: 485 PDLPEGTTCFASGKPAKKWSFWGRSY 510



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,603,995
Number of extensions: 492011
Number of successful extensions: 1177
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1173
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 274
Effective length of database: 11,657,759
Effective search space: 3194225966
Effective search space used: 3194225966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)