Os07g0165000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Prolyl-tRNA synthetase.
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Os07g0165000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Prolyl-tRNA synthetase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.16 | 0.258 | 12.7 | 0.175 | 0.797 | 0.778 | -0.0234 | -0.546 | -0.292 | 21.3 | 25.57 | 99 | -- | -- |
| 30.25 | 0.256 | 12.7 | 0.229 | 0.785 | 0.723 | -0.0298 | -- | -0.286 | 21.2 | 25.49 | 117 | -- | -- |
| 30.16 | 0.256 | 12.7 | 0.175 | 0.796 | 0.78 | -- | -0.554 | -0.291 | 21.3 | 25.6 | 101 | -- | -- |
| 30.24 | 0.256 | 12.7 | 0.237 | 0.783 | 0.73 | -- | -- | -0.278 | 21.3 | 25.5 | 119 | -- | -- |
| 50.83 | 0.332 | 12.7 | -0.00941 | -- | 1.12 | -- | -1.21 | -0.364 | -- | 25 | 544 | -- | -- |
| 38.74 | 0.292 | 12.7 | 0.353 | 0.88 | -- | 0.109 | -- | -0.237 | 20 | -- | -- | -- | -- |
| 38.78 | 0.292 | 12.7 | 0.35 | 0.88 | -- | -- | -- | -0.237 | 20 | -- | -- | -- | -- |
| 51.31 | 0.334 | 12.7 | 0.159 | -- | 1.02 | -- | -- | -0.321 | -- | 24.98 | 555 | -- | -- |
| 31.64 | 0.262 | 12.7 | -- | 0.777 | 0.79 | -- | -- | -0.309 | 21.4 | 25.4 | 120 | -- | -- |
| 81.07 | 0.421 | 12.7 | 0.341 | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
| 42.01 | 0.303 | 12.7 | -- | 0.878 | -- | -- | -- | -0.276 | 20 | -- | -- | -- | -- |
| 51.95 | 0.336 | 12.7 | -- | -- | 1.04 | -- | -- | -0.343 | -- | 24.9 | 556 | -- | -- |
| 84.14 | 0.428 | 12.7 | -- | -- | -- | -- | -- | -0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.16 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 4 | 29.21 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 12 | 29.34 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 21 | 29.42 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 25 | 29.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 15 |
| 28 | 29.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 41 | 29.53 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 45 | 29.56 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 50 | 29.57 | wind | 5 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 51 | 29.57 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 57 | 29.60 | wind | 5 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 62 | 29.62 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 69 | 29.65 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 9 |
| 78 | 29.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 86 | 29.70 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 98 | 29.74 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 110 | 29.76 | wind | 5 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 155 | 29.85 | wind | 5 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 158 | 29.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 163 | 29.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 217 | 29.97 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 235 | 30.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 261 | 30.04 | wind | 5 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 294 | 30.10 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 296 | 30.10 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 310 | 30.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 363 | 30.24 | temperature | 25 | 14400 | < th | dose dependent | sin | 22 | NA |
| 375 | 30.26 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 389 | 30.30 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 408 | 30.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 418 | 30.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 420 | 30.35 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 13 |
| 432 | 30.37 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 434 | 30.38 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 435 | 30.38 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 439 | 30.38 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 448 | 30.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 13 |
| 461 | 30.42 | temperature | 20 | 14400 | > th | dose independent | sin | 18 | NA |
| 462 | 30.42 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 489 | 30.45 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 498 | 30.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 508 | 30.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 542 | 30.50 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 554 | 30.52 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 601 | 30.57 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 622 | 30.60 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 640 | 30.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 652 | 30.62 | wind | 3 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 665 | 30.63 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 696 | 30.66 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 711 | 30.68 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 742 | 30.71 | wind | 3 | 14400 | > th | dose dependent | rect. | 20 | 13 |
| 743 | 30.71 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 762 | 30.74 | temperature | 20 | 14400 | < th | dose independent | sin | 18 | NA |
| 763 | 30.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 815 | 30.79 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 887 | 30.83 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 946 | 30.87 | temperature | 25 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 981 | 30.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 6 |