BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0155100 Os07g0155100|AK105193
         (391 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0155100  FAD dependent oxidoreductase family protein         598   e-171
Os01g0594700  FAD dependent oxidoreductase family protein         227   1e-59

>Os07g0155100 FAD dependent oxidoreductase family protein
          Length = 391

 Score =  598 bits (1542), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 308/391 (78%), Positives = 308/391 (78%)

Query: 1   MATSPAAAPPRRXXXXXXXXXXACTAYFLSTHAASPTVPTLVEKSSPACAASGKAGGFLA 60
           MATSPAAAPPRR          ACTAYFLSTHAASPTVPTLVEKSSPACAASGKAGGFLA
Sbjct: 1   MATSPAAAPPRRVVICGGGVVGACTAYFLSTHAASPTVPTLVEKSSPACAASGKAGGFLA 60

Query: 61  LDWCDKTPXXXXXXXXXXXXXXXXXXTLDGGSAYGFRPVHTLSICXXXXXXXXXXXXXXX 120
           LDWCDKTP                  TLDGGSAYGFRPVHTLSIC               
Sbjct: 61  LDWCDKTPALSALARASFALHRRLAATLDGGSAYGFRPVHTLSICLPTDPDPAAAAAAAA 120

Query: 121 XXXXXXWVDPAASAAPPRELGTTDTTAQVHPGFFTKAVLAASGAEVVIXXXXXXXXXXXX 180
                 WVDPAASAAPPRELGTTDTTAQVHPGFFTKAVLAASGAEVVI            
Sbjct: 121 SPLLPAWVDPAASAAPPRELGTTDTTAQVHPGFFTKAVLAASGAEVVIGEAERVVVRDGR 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXPWSGRFEMVREVFDVSGLKAHSIVLRPREPENITPHAL 240
                                 PWSGRFEMVREVFDVSGLKAHSIVLRPREPENITPHAL
Sbjct: 181 VAGVVVRGRGEVDADAVVLALVPWSGRFEMVREVFDVSGLKAHSIVLRPREPENITPHAL 240

Query: 241 FLSYQPEPGAKMLDPEVYPRPTGEVYICGMTKDEEVPDDPETITGEPDSIAMLHKIAGRV 300
           FLSYQPEPGAKMLDPEVYPRPTGEVYICGMTKDEEVPDDPETITGEPDSIAMLHKIAGRV
Sbjct: 241 FLSYQPEPGAKMLDPEVYPRPTGEVYICGMTKDEEVPDDPETITGEPDSIAMLHKIAGRV 300

Query: 301 SGQLKREEGAEVVAEQACYLPCTDDGLPVIGEMPGVKGCYVATGHSCWGILNAPATGAAL 360
           SGQLKREEGAEVVAEQACYLPCTDDGLPVIGEMPGVKGCYVATGHSCWGILNAPATGAAL
Sbjct: 301 SGQLKREEGAEVVAEQACYLPCTDDGLPVIGEMPGVKGCYVATGHSCWGILNAPATGAAL 360

Query: 361 AELILDGDAKIVDLAPFSPARFLKKKSKRGV 391
           AELILDGDAKIVDLAPFSPARFLKKKSKRGV
Sbjct: 361 AELILDGDAKIVDLAPFSPARFLKKKSKRGV 391



>Os01g0594700 FAD dependent oxidoreductase family protein
          Length = 379

 Score =  227 bits (578), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/130 (82%), Positives = 117/130 (90%)

Query: 259 PRPTGEVYICGMTKDEEVPDDPETITGEPDSIAMLHKIAGRVSGQLKREEGAEVVAEQAC 318
           P   GEVYICG+TKDEEVP+DP TITG+PDSIA LH+IAGRVS QLKREEGAEVVAEQAC
Sbjct: 144 PWSGGEVYICGITKDEEVPNDPATITGDPDSIAALHEIAGRVSSQLKREEGAEVVAEQAC 203

Query: 319 YLPCTDDGLPVIGEMPGVKGCYVATGHSCWGILNAPATGAALAELILDGDAKIVDLAPFS 378
           Y+PCT DGLPVIGEMPGVKGCYVATGH  WGILNAPATGAALAELIL+G A I DL+PFS
Sbjct: 204 YMPCTSDGLPVIGEMPGVKGCYVATGHGGWGILNAPATGAALAELILNGSASIFDLSPFS 263

Query: 379 PARFLKKKSK 388
           PARFL K+++
Sbjct: 264 PARFLNKRTR 273



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,453,124
Number of extensions: 507382
Number of successful extensions: 1159
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 288
Effective length of database: 11,657,759
Effective search space: 3357434592
Effective search space used: 3357434592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)