BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0151800 Os07g0151800|AK105339
         (128 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0151800  Conserved hypothetical protein                      192   4e-50
Os07g0151600                                                       79   6e-16

>Os07g0151800 Conserved hypothetical protein
          Length = 128

 Score =  192 bits (489), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/128 (75%), Positives = 96/128 (75%)

Query: 1   MAMRYLAGKXXXXXXXXXXXXXXXXXXXXXXQGGRSNATTENVARNMDGDLGWVREEIAK 60
           MAMRYLAGK                      QGGRSNATTENVARNMDGDLGWVREEIAK
Sbjct: 1   MAMRYLAGKLRAPAPAAAALRRPRSLSANASQGGRSNATTENVARNMDGDLGWVREEIAK 60

Query: 61  LEKLRLEIEETTRYNRLHKRCLIGSVXXXXXXXXXXCAWYTRSYRKALKEHFDNPIVWMP 120
           LEKLRLEIEETTRYNRLHKRCLIGSV          CAWYTRSYRKALKEHFDNPIVWMP
Sbjct: 61  LEKLRLEIEETTRYNRLHKRCLIGSVFAGFGLGGLACAWYTRSYRKALKEHFDNPIVWMP 120

Query: 121 PYSTSSPE 128
           PYSTSSPE
Sbjct: 121 PYSTSSPE 128



>Os07g0151600 
          Length = 136

 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 1   MAMRYLAGKXXXXXXXXXXXXX--XXXXXXXXXQGGRSNATTENVA------RNMDGDLG 52
           MAMRYLAGK                        QG  +N +T  +A      +N+D  + 
Sbjct: 1   MAMRYLAGKLRAPAPAAAALRRPRSLSANASQSQGKYTNGSTTELASSMKVVKNVDETIR 60

Query: 53  WVREEIAKLEKLRLEIEETTRYNRLHKRCLIGSVXXXXXXXXXXCAWYTRSYRKALKEHF 112
            + EE+AK+E    EI E  RYNR H+RC++GSV          C  YTRSYRKAL+E++
Sbjct: 61  QLHEEVAKMEAASKEIAEIIRYNRFHRRCIMGSVVLGVGLAGVSCVRYTRSYRKALREYY 120

Query: 113 DNPIVWMPPYSTSSP 127
              +     YS  +P
Sbjct: 121 VVGLEMENKYSPRTP 135



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,408,076
Number of extensions: 93797
Number of successful extensions: 290
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 2
Length of query: 128
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 39
Effective length of database: 12,388,755
Effective search space: 483161445
Effective search space used: 483161445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)