BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0115200 Os07g0115200|AK111404
         (243 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0115200  Conserved hypothetical protein                      337   6e-93
Os08g0362700                                                       72   2e-13

>Os07g0115200 Conserved hypothetical protein
          Length = 243

 Score =  337 bits (863), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 180/229 (78%), Positives = 180/229 (78%)

Query: 15  WSWWLCASMMGNRSSGGGFTLPLWSQRVVKIPDLSYLXXXXXXXXXXCWRCPACVWAHXX 74
           WSWWLCASMMGNRSSGGGFTLPLWSQRVVKIPDLSYL          CWRCPACVWAH  
Sbjct: 15  WSWWLCASMMGNRSSGGGFTLPLWSQRVVKIPDLSYLGGDGGGSSGGCWRCPACVWAHAG 74

Query: 75  XXXXXXXXXXXXXXSLRCTCAGGGDGVYAALGVAAVIVSLRRACAGSGDSVCTALGAAAV 134
                         SLRCTCAGGGDGVYAALGVAAVIVSLRRACAGSGDSVCTALGAAAV
Sbjct: 75  GGNYVALGVVAVVVSLRCTCAGGGDGVYAALGVAAVIVSLRRACAGSGDSVCTALGAAAV 134

Query: 135 VVSLRRXXXXXXXXXXXXXXXXXXXXXXXHGWLDDDNLLQVNVFGIFVIGCLLRLDSCGS 194
           VVSLRR                       HGWLDDDNLLQVNVFGIFVIGCLLRLDSCGS
Sbjct: 135 VVSLRRAPVVCCAPACAAPVAASASVGSSHGWLDDDNLLQVNVFGIFVIGCLLRLDSCGS 194

Query: 195 KLQVTSFLAIVVLTARHKSIGNLSNAPLLMVGWSMVWPSLLFPSSRNRV 243
           KLQVTSFLAIVVLTARHKSIGNLSNAPLLMVGWSMVWPSLLFPSSRNRV
Sbjct: 195 KLQVTSFLAIVVLTARHKSIGNLSNAPLLMVGWSMVWPSLLFPSSRNRV 243



>Os08g0362700 
          Length = 256

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 41/55 (74%)

Query: 172 LLQVNVFGIFVIGCLLRLDSCGSKLQVTSFLAIVVLTARHKSIGNLSNAPLLMVG 226
           LLQ + FGI V GCL+  +SCGS LQVT FLAI  L AR KSIG+L  APLLMVG
Sbjct: 202 LLQADAFGILVTGCLICSESCGSTLQVTLFLAISALIARQKSIGSLLKAPLLMVG 256



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.138    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,902,415
Number of extensions: 229494
Number of successful extensions: 964
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 958
Number of HSP's successfully gapped: 3
Length of query: 243
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 145
Effective length of database: 11,918,829
Effective search space: 1728230205
Effective search space used: 1728230205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)