Os07g0115200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0115200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.52 | 0.584 | 3.58 | 0.223 | 0.323 | 1.1 | 1.16 | -1.74 | -0.22 | 5.6 | 25.6 | 1752 | -- | -- |
| 155.22 | 0.58 | 3.53 | 0.624 | 0.304 | 0.924 | 1.2 | -- | -0.139 | 5.64 | 25.2 | 1753 | -- | -- |
| 157.79 | 0.585 | 3.58 | 0.215 | 0.327 | 1.11 | -- | -1.81 | -0.227 | 5.79 | 25.6 | 1740 | -- | -- |
| 158.64 | 0.587 | 3.54 | 0.633 | 0.225 | 0.86 | -- | -- | -0.17 | 5.72 | 24.68 | 1546 | -- | -- |
| 160.33 | 0.59 | 3.58 | 0.325 | -- | 0.933 | -- | -1.16 | -0.222 | -- | 25.2 | 1390 | -- | -- |
| 182.86 | 0.634 | 3.51 | 0.922 | 0.225 | -- | 1.22 | -- | -0.041 | 5.18 | -- | -- | -- | -- |
| 186.62 | 0.64 | 3.52 | 0.922 | 0.233 | -- | -- | -- | -0.0467 | 5.19 | -- | -- | -- | -- |
| 160.02 | 0.589 | 3.56 | 0.617 | -- | 0.892 | -- | -- | -0.222 | -- | 23.1 | 1331 | -- | -- |
| 167.5 | 0.603 | 3.58 | -- | 0.257 | 1.03 | -- | -- | -0.322 | 5.65 | 23 | 1597 | -- | -- |
| 189.46 | 0.643 | 3.52 | 0.931 | -- | -- | -- | -- | -0.0409 | -- | -- | -- | -- | -- |
| 209.05 | 0.676 | 3.54 | -- | 0.249 | -- | -- | -- | -0.149 | 5.05 | -- | -- | -- | -- |
| 169.25 | 0.606 | 3.58 | -- | -- | 1.03 | -- | -- | -0.318 | -- | 22.98 | 1340 | -- | -- |
| 212.3 | 0.68 | 3.54 | -- | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 3 | 152.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 5 | 153.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 13 | 153.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 13 |
| 63 | 154.08 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 78 | 154.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 81 | 154.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 101 | 154.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 111 | 154.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 159 | 154.68 | temperature | 25 | 720 | > th | dose dependent | sin | 9 | NA |
| 161 | 154.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 220 | 155.02 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 340 | 155.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 353 | 155.48 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 460 | 155.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 632 | 156.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 656 | 156.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 727 | 156.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 904 | 156.72 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 22 |