BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0113700 Os07g0113700|AK105098
         (1011 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0113700  Protein prenyltransferase domain containing pr...  1928   0.0  

>Os07g0113700 Protein prenyltransferase domain containing protein
          Length = 1011

 Score = 1928 bits (4995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 936/1011 (92%), Positives = 936/1011 (92%)

Query: 1    MGSERAELARVCGGRNWSKAIRILDAHLARSPSSIHDLCNRAFCYSQLELHKHVVKDCDR 60
            MGSERAELARVCGGRNWSKAIRILDAHLARSPSSIHDLCNRAFCYSQLELHKHVVKDCDR
Sbjct: 1    MGSERAELARVCGGRNWSKAIRILDAHLARSPSSIHDLCNRAFCYSQLELHKHVVKDCDR 60

Query: 61   ALELDPALLQAYVLKGKALSALGKREEALAVWEQGHEVAVRDTMDLKQXXXXXXXVSSVK 120
            ALELDPALLQAYVLKGKALSALGKREEALAVWEQGHEVAVRDTMDLKQ       VSSVK
Sbjct: 61   ALELDPALLQAYVLKGKALSALGKREEALAVWEQGHEVAVRDTMDLKQLLELEELVSSVK 120

Query: 121  ICETIECEDRVVDASPCDTKVVISEDRVVDTSCTATTMADTKTVVCEENIGNSGVISNGA 180
            ICETIECEDRVVDASPCDTKVVISEDRVVDTSCTATTMADTKTVVCEENIGNSGVISNGA
Sbjct: 121  ICETIECEDRVVDASPCDTKVVISEDRVVDTSCTATTMADTKTVVCEENIGNSGVISNGA 180

Query: 181  VILANDNKADNNKECSXXXXXXXXXXXXXXXXXXXXXXXXXXXRKEINSQIEDVADSISS 240
            VILANDNKADNNKECS                           RKEINSQIEDVADSISS
Sbjct: 181  VILANDNKADNNKECSSPTKDTTGTHHTPKKTTKPDKKSKAKGRKEINSQIEDVADSISS 240

Query: 241  GETVAVDQTLFAXXXXXXXXXXXLDFRLSRGIAQVNEGRYDQAISIFDQILRETPTYPEA 300
            GETVAVDQTLFA           LDFRLSRGIAQVNEGRYDQAISIFDQILRETPTYPEA
Sbjct: 241  GETVAVDQTLFASKISKSSKSISLDFRLSRGIAQVNEGRYDQAISIFDQILRETPTYPEA 300

Query: 301  LIGRGTAYAFQRELDSAISDFTKAIQSNPSAGEAWKRRGQARAALGEFTEAVEDLTKALE 360
            LIGRGTAYAFQRELDSAISDFTKAIQSNPSAGEAWKRRGQARAALGEFTEAVEDLTKALE
Sbjct: 301  LIGRGTAYAFQRELDSAISDFTKAIQSNPSAGEAWKRRGQARAALGEFTEAVEDLTKALE 360

Query: 361  FEPNSPDILHERGIVNFKFKDYNAAVEDLSTCVKRDKKNSSAHTYLGLTLSALGEYKRAE 420
            FEPNSPDILHERGIVNFKFKDYNAAVEDLSTCVKRDKKNSSAHTYLGLTLSALGEYKRAE
Sbjct: 361  FEPNSPDILHERGIVNFKFKDYNAAVEDLSTCVKRDKKNSSAHTYLGLTLSALGEYKRAE 420

Query: 421  DEHLLGIKYDENFLDSWAHLSQLYLDIGCPEKMLNNVEKVLQIDVSFGKAYHLRGILYHG 480
            DEHLLGIKYDENFLDSWAHLSQLYLDIGCPEKMLNNVEKVLQIDVSFGKAYHLRGILYHG
Sbjct: 421  DEHLLGIKYDENFLDSWAHLSQLYLDIGCPEKMLNNVEKVLQIDVSFGKAYHLRGILYHG 480

Query: 481  MGRHRSAIKDLSVALKHESSNIECLYLRASCHHAIGEYKAAIKDYDDVLDLELDSMDKFV 540
            MGRHRSAIKDLSVALKHESSNIECLYLRASCHHAIGEYKAAIKDYDDVLDLELDSMDKFV
Sbjct: 481  MGRHRSAIKDLSVALKHESSNIECLYLRASCHHAIGEYKAAIKDYDDVLDLELDSMDKFV 540

Query: 541  LQCLAFYQKEIALYTASKANLEFSQFNIDDDVDPLFKEYWCKRLHPKNVAEKVYRQPPLR 600
            LQCLAFYQKEIALYTASKANLEFSQFNIDDDVDPLFKEYWCKRLHPKNVAEKVYRQPPLR
Sbjct: 541  LQCLAFYQKEIALYTASKANLEFSQFNIDDDVDPLFKEYWCKRLHPKNVAEKVYRQPPLR 600

Query: 601  ISLRSGRLNKQDFKFTKHQTTLILAADSIGKKIQYNCRGFLPNQRQYRMAGLAAIEIAQK 660
            ISLRSGRLNKQDFKFTKHQTTLILAADSIGKKIQYNCRGFLPNQRQYRMAGLAAIEIAQK
Sbjct: 601  ISLRSGRLNKQDFKFTKHQTTLILAADSIGKKIQYNCRGFLPNQRQYRMAGLAAIEIAQK 660

Query: 661  VSKAWRFLRNPKNNAKLVRRRDKLNACQNRGGYCXXXXXXXXXXXXXNEDRISSGISLSW 720
            VSKAWRFLRNPKNNAKLVRRRDKLNACQNRGGYC             NEDRISSGISLSW
Sbjct: 661  VSKAWRFLRNPKNNAKLVRRRDKLNACQNRGGYCSTSTLSGSPTSSPNEDRISSGISLSW 720

Query: 721  HDVYNIAVKWRQISEPCDPVVWINKLSEEFNSGFGSHTPMLLGQAKIIRYYPYYQSVLEA 780
            HDVYNIAVKWRQISEPCDPVVWINKLSEEFNSGFGSHTPMLLGQAKIIRYYPYYQSVLEA
Sbjct: 721  HDVYNIAVKWRQISEPCDPVVWINKLSEEFNSGFGSHTPMLLGQAKIIRYYPYYQSVLEA 780

Query: 781  AKNIMLDLKYVNNAEDRAIFLTDIEKLKKIEVASSCSELYHIVGETYWVSTRCDSIAFQG 840
            AKNIMLDLKYVNNAEDRAIFLTDIEKLKKIEVASSCSELYHIVGETYWVSTRCDSIAFQG
Sbjct: 781  AKNIMLDLKYVNNAEDRAIFLTDIEKLKKIEVASSCSELYHIVGETYWVSTRCDSIAFQG 840

Query: 841  RRLEGTRITTQNMGKTGFDFAIRTPCTPSRWEEYDEEMSAAWEAICEAYCSDTNPTRDPD 900
            RRLEGTRITTQNMGKTGFDFAIRTPCTPSRWEEYDEEMSAAWEAICEAYCSDTNPTRDPD
Sbjct: 841  RRLEGTRITTQNMGKTGFDFAIRTPCTPSRWEEYDEEMSAAWEAICEAYCSDTNPTRDPD 900

Query: 901  MLDAVKAAILRMTYYWYNFMPLSRXXXXXXXXXXXXXXXXXNMDVTASIPHGVQVDWEAI 960
            MLDAVKAAILRMTYYWYNFMPLSR                 NMDVTASIPHGVQVDWEAI
Sbjct: 901  MLDAVKAAILRMTYYWYNFMPLSRGSAVVGYVVLLGLFLAANMDVTASIPHGVQVDWEAI 960

Query: 961  LSQDPDTFVDKIKPWLYPSIKTSRNLKDYADVSVAFSTTGSVVAALTCVDT 1011
            LSQDPDTFVDKIKPWLYPSIKTSRNLKDYADVSVAFSTTGSVVAALTCVDT
Sbjct: 961  LSQDPDTFVDKIKPWLYPSIKTSRNLKDYADVSVAFSTTGSVVAALTCVDT 1011



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,699,797
Number of extensions: 1182812
Number of successful extensions: 3267
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3244
Number of HSP's successfully gapped: 1
Length of query: 1011
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 900
Effective length of database: 11,240,047
Effective search space: 10116042300
Effective search space used: 10116042300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)