Os07g0113700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0113700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.01 | 0.21 | 12 | -0.277 | 0.512 | -0.51 | 0.366 | -0.301 | 0.213 | 1.48 | 25.09 | 374 | -- | -- |
| 20.16 | 0.209 | 12 | -0.305 | 0.511 | -0.475 | 0.402 | -- | 0.205 | 1.48 | 25.19 | 411 | -- | -- |
| 20.51 | 0.211 | 12 | -0.291 | 0.504 | -0.505 | -- | -0.251 | 0.214 | 1.58 | 24.95 | 419 | -- | -- |
| 20.59 | 0.211 | 12 | -0.332 | 0.512 | -0.474 | -- | -- | 0.205 | 1.55 | 25.2 | 375 | -- | -- |
| 31.11 | 0.26 | 12 | -0.311 | -- | -0.657 | -- | -0.351 | 0.175 | -- | 26.64 | 924 | -- | -- |
| 23.52 | 0.227 | 12 | -0.202 | 0.484 | -- | 0.351 | -- | 0.301 | 1.03 | -- | -- | -- | -- |
| 24.03 | 0.23 | 12 | -0.215 | 0.484 | -- | -- | -- | 0.299 | 1.11 | -- | -- | -- | -- |
| 31.29 | 0.261 | 12 | -0.391 | -- | -0.668 | -- | -- | 0.161 | -- | 27.2 | 959 | -- | -- |
| 23.41 | 0.225 | 12 | -- | 0.532 | -0.361 | -- | -- | 0.266 | 1.75 | 31.7 | 353 | -- | -- |
| 38.54 | 0.29 | 12 | -0.196 | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
| 25.25 | 0.235 | 12 | -- | 0.48 | -- | -- | -- | 0.323 | 1.1 | -- | -- | -- | -- |
| 34.89 | 0.275 | 12 | -- | -- | -0.504 | -- | -- | 0.235 | -- | 27.3 | 947 | -- | -- |
| 39.56 | 0.294 | 12 | -- | -- | -- | -- | -- | 0.331 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 3 | 19.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 125 | 19.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 216 | 19.94 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 222 | 19.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 224 | 19.96 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 255 | 19.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 368 | 20.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 477 | 20.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 478 | 20.14 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 500 | 20.15 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 518 | 20.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 520 | 20.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 538 | 20.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 581 | 20.19 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 12 |
| 598 | 20.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 600 | 20.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 646 | 20.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 701 | 20.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 702 | 20.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 723 | 20.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 724 | 20.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 730 | 20.25 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 12 |