BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0107900 Os07g0107900|AK073651
         (551 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0107900  Conserved hypothetical protein                      749   0.0  

>Os07g0107900 Conserved hypothetical protein
          Length = 551

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/383 (96%), Positives = 370/383 (96%)

Query: 169 DHASRNKIVQDYDNGHAHRAENVKSVEIADRDEKAMADTSKGXXXXXXXXXXXXXKNESV 228
           DHASRNKIVQDYDNGHAHRAENVKSVEIADRDEKAMADTSKG             KNESV
Sbjct: 169 DHASRNKIVQDYDNGHAHRAENVKSVEIADRDEKAMADTSKGSSIEISHSIIDHEKNESV 228

Query: 229 EKMESAPTKDADETQDILPAGSGSPDAQDLELILRQKALENFRKFRGAALMAGKPQTNGT 288
           EKMESAPTKDADETQDILPAGSGSPDAQDLELILRQKALENFRKFRGAALMAGKPQTNGT
Sbjct: 229 EKMESAPTKDADETQDILPAGSGSPDAQDLELILRQKALENFRKFRGAALMAGKPQTNGT 288

Query: 289 GKEVVTDSPKSSDTKIAEASSVDKPFQRQRSGLSVNCSVGSPRLEDFGNHITPRKQESSA 348
           GKEVVTDSPKSSDTKIAEASSVDKPFQRQRSGLSVNCSVGSPRLEDFGNHITPRKQESSA
Sbjct: 289 GKEVVTDSPKSSDTKIAEASSVDKPFQRQRSGLSVNCSVGSPRLEDFGNHITPRKQESSA 348

Query: 349 GKSVGVESPGTFEAGSTSGRTEQKGSSLEPTRSNSQIRLQDGRSSSSIMHRLGSPPRSSA 408
           GKSVGVESPGTFEAGSTSGRTEQKGSSLEPTRSNSQIRLQDGRSSSSIMHRLGSPPRSSA
Sbjct: 349 GKSVGVESPGTFEAGSTSGRTEQKGSSLEPTRSNSQIRLQDGRSSSSIMHRLGSPPRSSA 408

Query: 409 SVIRRLGSSAGVNYVNGNPRVRSVVSIPTKEGLDSGTSITTPSACDNSPPVENISEVRHP 468
           SVIRRLGSSAGVNYVNGNPRVRSVVSIPTKEGLDSGTSITTPSACDNSPPVENISEVRHP
Sbjct: 409 SVIRRLGSSAGVNYVNGNPRVRSVVSIPTKEGLDSGTSITTPSACDNSPPVENISEVRHP 468

Query: 469 PIDTNKIEGTKGDERNSGEASAPNVSTLSTGEVKDQPGTEVKDGSQFEKKTFSRMHEGET 528
           PIDTNKIEGTKGDERNSGEASAPNVSTLSTGEVKDQPGTEVKDGSQFEKKTFSRMHEGET
Sbjct: 469 PIDTNKIEGTKGDERNSGEASAPNVSTLSTGEVKDQPGTEVKDGSQFEKKTFSRMHEGET 528

Query: 529 VQVSYKVYIPKKSPALARRKLQR 551
           VQVSYKVYIPKKSPALARRKLQR
Sbjct: 529 VQVSYKVYIPKKSPALARRKLQR 551



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.305    0.123    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,341,416
Number of extensions: 583002
Number of successful extensions: 1328
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1328
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 445
Effective length of database: 11,501,117
Effective search space: 5117997065
Effective search space used: 5117997065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 159 (65.9 bits)