Os07g0107900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0107900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.97 | 0.244 | 11.4 | 0.9 | 0.156 | 0.623 | -0.277 | -0.475 | 0.223 | 3.77 | 26.5 | 36 | -- | -- |
| 27.38 | 0.244 | 11.4 | 0.904 | 0.199 | 0.577 | -0.596 | -- | 0.21 | 2.22 | 28.49 | 35 | -- | -- |
| 27.09 | 0.242 | 11.4 | 0.9 | 0.144 | 0.645 | -- | -0.595 | 0.227 | 4.76 | 25.21 | 35 | -- | -- |
| 28.76 | 0.25 | 11.4 | 0.916 | 0.148 | 0.628 | -- | -- | 0.224 | 4.09 | 26.26 | 35 | -- | -- |
| 28.03 | 0.247 | 11.4 | 0.91 | -- | 0.687 | -- | -0.605 | 0.229 | -- | 25.21 | 35 | -- | -- |
| 34.08 | 0.274 | 11.4 | 0.872 | 0.672 | -- | -0.583 | -- | 0.181 | 0.967 | -- | -- | -- | -- |
| 35.51 | 0.279 | 11.4 | 0.894 | 0.673 | -- | -- | -- | 0.185 | 0.953 | -- | -- | -- | -- |
| 29.67 | 0.254 | 11.4 | 0.922 | -- | 0.69 | -- | -- | 0.232 | -- | 26.13 | 35 | -- | -- |
| 50.8 | 0.332 | 11.5 | -- | 0.194 | 0.581 | -- | -- | 0.12 | 3.32 | 26.15 | 33 | -- | -- |
| 63.72 | 0.373 | 11.4 | 0.919 | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
| 56.55 | 0.352 | 11.5 | -- | 0.688 | -- | -- | -- | 0.0851 | 1.01 | -- | -- | -- | -- |
| 52.07 | 0.336 | 11.4 | -- | -- | 0.684 | -- | -- | 0.129 | -- | 25.51 | 37 | -- | -- |
| 85.98 | 0.433 | 11.5 | -- | -- | -- | -- | -- | 0.0955 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 2 | 24.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 13 | 25.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 20 | 25.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 24 | 25.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 34 | 25.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 35 | 25.63 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 37 | 25.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 58 | 26.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 99 | 26.34 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 19 |
| 116 | 26.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 146 | 26.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 152 | 26.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 160 | 26.74 | radiation | 20 | 30 | < th | dose dependent | sin | 0 | NA |
| 234 | 27.03 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 244 | 27.06 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 8 |
| 254 | 27.11 | radiation | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 262 | 27.14 | radiation | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 264 | 27.15 | radiation | 30 | 30 | < th | dose dependent | no | NA | NA |
| 279 | 27.20 | radiation | 30 | 30 | < th | dose dependent | rect. | 10 | 23 |
| 284 | 27.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 313 | 27.30 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 20 |
| 321 | 27.32 | radiation | 20 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 329 | 27.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 343 | 27.37 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 15 | 16 |
| 421 | 27.53 | radiation | 10 | 30 | > th | dose independent | sin | 0 | NA |
| 450 | 27.57 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 9 |
| 484 | 27.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 493 | 27.63 | radiation | 10 | 10 | > th | dose independent | rect. | 6 | 11 |
| 505 | 27.63 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 513 | 27.64 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 611 | 27.65 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 17 |
| 706 | 27.77 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 726 | 27.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 824 | 27.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 828 | 27.88 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 8 |
| 843 | 27.88 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 864 | 27.90 | radiation | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 884 | 27.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 913 | 27.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 915 | 27.96 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |