BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0105200 Os07g0105200|AK107603
         (430 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0105200  Leucine-rich repeat 2 containing protein            877   0.0  

>Os07g0105200 Leucine-rich repeat 2 containing protein
          Length = 430

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   VRASAVSRRLREAWMGMEAYELDASTIPDHHLLDLDSTFAAIVDRVVFNHSGPGIKSMSL 60
           VRASAVSRRLREAWMGMEAYELDASTIPDHHLLDLDSTFAAIVDRVVFNHSGPGIKSMSL
Sbjct: 1   VRASAVSRRLREAWMGMEAYELDASTIPDHHLLDLDSTFAAIVDRVVFNHSGPGIKSMSL 60

Query: 61  AHTRYDTDGDRRVTAWLDRLASREHHRLERLDVNIGAALHTPASLFRCETLVELRLVVHA 120
           AHTRYDTDGDRRVTAWLDRLASREHHRLERLDVNIGAALHTPASLFRCETLVELRLVVHA
Sbjct: 61  AHTRYDTDGDRRVTAWLDRLASREHHRLERLDVNIGAALHTPASLFRCETLVELRLVVHA 120

Query: 121 AARGLRLDVDGAVHLPQLRRLCLEHAGFRSSTQFQNLIDGCPLLELLHLRFTAVARREDT 180
           AARGLRLDVDGAVHLPQLRRLCLEHAGFRSSTQFQNLIDGCPLLELLHLRFTAVARREDT
Sbjct: 121 AARGLRLDVDGAVHLPQLRRLCLEHAGFRSSTQFQNLIDGCPLLELLHLRFTAVARREDT 180

Query: 181 VGIEIRSPSVRRVVLEGCGGYGMVPFEVSAPNVEELVLSGRNMVAVEKGGVRRLSARKVS 240
           VGIEIRSPSVRRVVLEGCGGYGMVPFEVSAPNVEELVLSGRNMVAVEKGGVRRLSARKVS
Sbjct: 181 VGIEIRSPSVRRVVLEGCGGYGMVPFEVSAPNVEELVLSGRNMVAVEKGGVRRLSARKVS 240

Query: 241 LLMDDKLWWYNVFAPFHHFTAFLNVGTNMSRIMAGFHGVLELAISGWCIEYLSKIVDSMN 300
           LLMDDKLWWYNVFAPFHHFTAFLNVGTNMSRIMAGFHGVLELAISGWCIEYLSKIVDSMN
Sbjct: 241 LLMDDKLWWYNVFAPFHHFTAFLNVGTNMSRIMAGFHGVLELAISGWCIEYLSKIVDSMN 300

Query: 301 LPDWGIEVLRVEGMWPNQGQAGVVLHLLRSSPCLRNLFITNELEHPREISIDENREQYPA 360
           LPDWGIEVLRVEGMWPNQGQAGVVLHLLRSSPCLRNLFITNELEHPREISIDENREQYPA
Sbjct: 301 LPDWGIEVLRVEGMWPNQGQAGVVLHLLRSSPCLRNLFITNELEHPREISIDENREQYPA 360

Query: 361 TPEFLFDAVPGRLTHLRRFFMFNFSGNRNEISIIKFVLGSSSISINPDQFGVTDYLGNDW 420
           TPEFLFDAVPGRLTHLRRFFMFNFSGNRNEISIIKFVLGSSSISINPDQFGVTDYLGNDW
Sbjct: 361 TPEFLFDAVPGRLTHLRRFFMFNFSGNRNEISIIKFVLGSSSISINPDQFGVTDYLGNDW 420

Query: 421 SSTQLILASL 430
           SSTQLILASL
Sbjct: 421 SSTQLILASL 430



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,905,887
Number of extensions: 633049
Number of successful extensions: 1947
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1947
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 326
Effective length of database: 11,605,545
Effective search space: 3783407670
Effective search space used: 3783407670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)