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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0105200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat 2 containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0207) R2 : 0.0017
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0383 (0.0435) R2dN8 : 0.0022 R2N8 : 0.0017
σ : 0.389
deviance : 69.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.56 0.383 2.83 0.0801 0.152 -0.188 0.238 2.14 0.0481 9.84 0.1047 9 -- --
67.67 0.383 2.84 0.0692 0.143 0.278 0.152 -- 0.0526 9.98 0.1041 8 -- --
66.77 0.381 2.83 0.0895 0.15 -0.181 -- 2.01 0.0485 9.75 0.02764 8 -- --
67.76 0.383 2.84 0.0747 0.142 0.268 -- -- 0.0529 10 0.1053 8 -- --
68.12 0.384 2.84 0.0908 -- -0.201 -- 2.07 0.0482 -- 0.07734 9 -- --
68.08 0.387 2.84 0.0838 0.14 -- 0.127 -- 0.0475 9.52 -- -- -- --
68.14 0.387 2.84 0.0885 0.139 -- -- -- 0.0477 9.57 -- -- -- --
68.97 0.387 2.84 0.0747 -- 0.233 -- -- 0.0526 -- 0.1082 8 -- --
67.9 0.384 2.84 -- 0.142 0.285 -- -- 0.0453 10 0.05841 8 -- --
69.28 0.389 2.84 0.0875 -- -- -- -- 0.048 -- -- -- -- --
68.35 0.387 2.84 -- 0.139 -- -- -- 0.0379 9.52 -- -- -- --
69.12 0.387 2.84 -- -- 0.253 -- -- 0.0447 -- 0.05798 8 -- --
69.48 0.389 2.85 -- -- -- -- -- 0.0383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.68 temperature 25.0 30 > th dose dependent rect. 6 1
3 56.39 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 56.59 radiation 10.0 30 < th dose independent rect. 6 1
5 57.36 temperature 25.0 30 > th dose dependent rect. 4 3
7 57.55 wind 3.0 30 > th dose dependent rect. 6 1
8 57.83 atmosphere 1010.0 30 < th dose dependent rect. 6 1
11 59.38 humidity 90.0 30 < th dose dependent rect. 6 1
12 59.44 radiation 40.0 90 > th dose dependent rect. 8 1
32 59.61 wind 3.0 30 > th dose independent rect. 6 1
37 60.23 radiation 1.0 10 > th dose dependent rect. 6 1
41 60.50 temperature 25.0 30 > th dose independent rect. 6 1
44 60.73 radiation 20.0 30 < th dose dependent rect. 6 1
51 61.70 wind 9.0 1440 < th dose independent rect. 7 1
52 61.70 temperature 10.0 1440 > th dose independent rect. 7 1
56 61.70 temperature 30.0 1440 < th dose independent rect. 7 1
60 61.70 humidity 50.0 1440 > th dose independent rect. 7 1
65 61.70 atmosphere 995.0 1440 > th dose independent rect. 7 1
66 61.70 atmosphere 1015.0 1440 < th dose independent rect. 7 1
67 61.70 temperature 10.0 1440 > th dose independent rect. 8 23
70 61.74 humidity 90.0 30 < th dose independent rect. 6 1
71 61.78 wind 1.0 30 < th dose independent rect. 6 1
75 61.85 atmosphere 1005.0 30 > th dose independent rect. 6 1
78 61.91 humidity 80.0 30 > th dose independent rect. 6 1
80 61.93 wind 5.0 30 < th dose independent rect. 6 1
83 61.93 temperature 10.0 30 > th dose independent rect. 6 1
85 61.93 temperature 30.0 30 < th dose independent rect. 6 1
86 61.93 humidity 50.0 30 > th dose independent rect. 6 1
91 61.93 radiation 1.0 30 > th dose independent rect. 6 1
95 61.93 precipitation 0.1 30 < th dose independent rect. 6 1
96 61.93 temperature 10.0 30 > th dose independent rect. 7 23
97 61.93 precipitation 0.1 30 < th dose dependent rect. 6 1
104 62.36 humidity 50.0 30 > th dose dependent rect. 6 1
105 62.38 wind 9.0 30 < th dose independent rect. 7 23
106 62.45 wind 9.0 30 < th dose dependent rect. 6 1
114 62.70 wind 7.0 90 > th dose independent rect. 4 5
118 62.70 wind 7.0 90 > th dose dependent rect. 3 6
120 62.71 wind 7.0 90 > th dose independent rect. 8 1
124 62.71 wind 7.0 90 > th dose dependent rect. 8 1
131 62.74 atmosphere 995.0 30 > th dose dependent rect. 6 1
186 63.91 temperature 30.0 10 > th dose independent rect. 10 1
198 64.24 temperature 30.0 30 < th dose dependent rect. 6 1
200 64.31 humidity 90.0 270 < th dose independent rect. 6 1
211 64.70 radiation 40.0 1440 < th dose independent rect. 7 1
218 64.91 humidity 90.0 30 > th dose independent rect. 13 1
228 64.91 humidity 90.0 30 > th dose dependent rect. 13 1
255 64.97 wind 1.0 90 < th dose dependent rect. 12 1
257 65.05 temperature 25.0 720 > th dose independent rect. 1 1
287 65.31 radiation 40.0 90 > th dose independent rect. 8 1
309 65.32 atmosphere 995.0 30 > th dose independent rect. 7 23
313 65.36 precipitation 0.1 30 < th dose independent rect. 7 23
314 65.36 precipitation 0.1 30 < th dose dependent rect. 7 23
315 65.37 wind 1.0 90 < th dose independent rect. 12 1
317 65.41 humidity 90.0 720 < th dose independent rect. 1 1
320 65.42 temperature 25.0 1440 < th dose independent rect. 5 1
324 65.47 humidity 80.0 4320 < th dose independent rect. 5 1
326 65.49 temperature 25.0 720 < th dose independent rect. 24 7
336 65.56 radiation 20.0 270 > th dose dependent rect. 6 1
352 65.65 humidity 80.0 4320 > th dose independent rect. 5 1
353 65.65 radiation 20.0 270 > th dose independent rect. 6 1
401 65.90 temperature 25.0 10 < th dose dependent rect. 9 1
403 65.91 temperature 25.0 720 < th dose independent rect. 1 1
410 65.95 radiation 10.0 30 < th dose independent rect. 6 9
424 65.99 humidity 80.0 4320 < th dose dependent rect. 5 1
438 66.03 humidity 80.0 4320 < th dose dependent rect. 2 4
456 66.07 humidity 90.0 270 < th dose dependent rect. 6 1
505 66.19 wind 1.0 10 < th dose independent rect. 23 1
512 66.19 wind 1.0 10 < th dose dependent rect. 23 1
518 66.20 wind 1.0 270 > th dose dependent rect. 6 1
535 66.24 radiation 10.0 10 < th dose dependent rect. 14 1
541 66.25 humidity 80.0 4320 > th dose independent rect. 23 8
563 66.28 wind 1.0 10 < th dose dependent rect. 17 7
583 66.29 wind 1.0 10 < th dose dependent rect. 11 14
585 66.30 humidity 90.0 720 > th dose independent rect. 1 2
600 66.31 wind 1.0 10 < th dose independent rect. 11 14
638 66.33 atmosphere 1015.0 30 < th dose independent rect. 7 23
662 66.36 temperature 10.0 30 > th dose dependent rect. 7 23
702 66.40 wind 1.0 10 < th dose independent rect. 17 8
758 66.44 humidity 90.0 720 > th dose independent rect. 24 6
761 66.44 temperature 25.0 90 < th dose independent rect. 1 7
772 66.45 humidity 90.0 30 < th dose independent rect. 6 4
835 66.48 atmosphere 1005.0 10 < th dose independent rect. 9 1
845 66.48 atmosphere 1010.0 10 < th dose independent rect. 6 4
850 66.48 wind 1.0 10 < th dose dependent sin 16 NA
928 66.52 temperature 25.0 10 > th dose dependent rect. 6 4
953 66.54 radiation 10.0 30 < th dose independent rect. 6 18
954 66.54 temperature 30.0 14400 > th dose dependent rect. 17 1
998 66.56 precipitation 0.1 1440 < th dose independent rect. 9 1