BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0731700 Os06g0731700|015-071-A07
(612 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0731700 Tetratricopeptide-like helical domain containi... 980 0.0
>Os06g0731700 Tetratricopeptide-like helical domain containing protein
Length = 612
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/566 (86%), Positives = 492/566 (86%)
Query: 47 YNGWADLAAEPDLPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFATRHLAP 106
YNGWADLAAEPDLPF GFATRHLAP
Sbjct: 47 YNGWADLAAEPDLPFPLQPSHALLPLLLLPIAALSLPRLPPLPLLAAAFSAGFATRHLAP 106
Query: 107 SPSPTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVANQLRDAARLAAQGTMLGDA 166
SPSPTH VANQLRDAARLAAQGTMLGDA
Sbjct: 107 SPSPTHSRRLAALLADLDAQLRALSSSSSSTADPSLLLDVANQLRDAARLAAQGTMLGDA 166
Query: 167 VKEAAGYFAAFSSPRKKPKTXXXXXLSLETPSPQDDGNGGLLASATNATTKRTQGKPLDS 226
VKEAAGYFAAFSSPRKKPKT LSLETPSPQDDGNGGLLASATNATTKRTQGKPLDS
Sbjct: 167 VKEAAGYFAAFSSPRKKPKTAAAAALSLETPSPQDDGNGGLLASATNATTKRTQGKPLDS 226
Query: 227 PSASGGTRTGLGDMLPFDMDIHPLDDAGFSAHSKQDDDADDGVERLVSKHRYGRHTDSFQ 286
PSASGGTRTGLGDMLPFDMDIHPLDDAGFSAHSKQDDDADDGVERLVSKHRYGRHTDSFQ
Sbjct: 227 PSASGGTRTGLGDMLPFDMDIHPLDDAGFSAHSKQDDDADDGVERLVSKHRYGRHTDSFQ 286
Query: 287 QGRLATESMESPLLERTLEIRDRSYKLKIESCRGNKSQSNEAQQRPSHHTTTSDNIDDES 346
QGRLATESMESPLLERTLEIRDRSYKLKIESCRGNKSQSNEAQQRPSHHTTTSDNIDDES
Sbjct: 287 QGRLATESMESPLLERTLEIRDRSYKLKIESCRGNKSQSNEAQQRPSHHTTTSDNIDDES 346
Query: 347 NAVDSDGDEFSHNVIEAAEILRKARECMMARDDEETADALLYKSARLLSTAVALRPSSLV 406
NAVDSDGDEFSHNVIEAAEILRKARECMMARDDEETADALLYKSARLLSTAVALRPSSLV
Sbjct: 347 NAVDSDGDEFSHNVIEAAEILRKARECMMARDDEETADALLYKSARLLSTAVALRPSSLV 406
Query: 407 AVGQLGNTYLLHGELKLKVSRELRTLLANTGALLNGRDRVSRSRKLDRRILSRENISSAL 466
AVGQLGNTYLLHGELKLKVSRELRTLLANTGALLNGRDRVSRSRKLDRRILSRENISSAL
Sbjct: 407 AVGQLGNTYLLHGELKLKVSRELRTLLANTGALLNGRDRVSRSRKLDRRILSRENISSAL 466
Query: 467 VDVCEECESLLVEAGRSYRMALSIDSGDVKALYNWGLALIFRAQLLADIGPEAAIDADRV 526
VDVCEECESLLVEAGRSYRMALSIDSGDVKALYNWGLALIFRAQLLADIGPEAAIDADRV
Sbjct: 467 VDVCEECESLLVEAGRSYRMALSIDSGDVKALYNWGLALIFRAQLLADIGPEAAIDADRV 526
Query: 527 YLAAIDKFDAMLSKSNTYAPEALYRWGIALQQRSYLRSGNNKEKMRLLEQAKSMFEDVLY 586
YLAAIDKFDAMLSKSNTYAPEALYRWGIALQQRSYLRSGNNKEKMRLLEQAKSMFEDVLY
Sbjct: 527 YLAAIDKFDAMLSKSNTYAPEALYRWGIALQQRSYLRSGNNKEKMRLLEQAKSMFEDVLY 586
Query: 587 VEADNKTVREALSSCIAELNYHGRWL 612
VEADNKTVREALSSCIAELNYHGRWL
Sbjct: 587 VEADNKTVREALSSCIAELNYHGRWL 612
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,502,048
Number of extensions: 666713
Number of successful extensions: 2324
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2320
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 505
Effective length of database: 11,448,903
Effective search space: 5781696015
Effective search space used: 5781696015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 159 (65.9 bits)