Os06g0731700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os06g0731700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.13 | 0.379 | 10.4 | -0.602 | 0.307 | 0.77 | -1.12 | 1.97 | -0.592 | 20 | 11.24 | 245 | -- | -- |
| 67.48 | 0.386 | 10.4 | -0.896 | 0.437 | 0.832 | -0.931 | -- | -0.683 | 20.7 | 15.52 | 279 | -- | -- |
| 66.99 | 0.384 | 10.4 | -0.583 | 0.434 | 0.809 | -- | 2.01 | -0.602 | 20.5 | -11.9 | 2 | -- | -- |
| 70.3 | 0.391 | 10.4 | -0.866 | 0.373 | 0.792 | -- | -- | -0.669 | 20.4 | 15.09 | 111 | -- | -- |
| 73.35 | 0.399 | 10.4 | -0.683 | -- | 0.954 | -- | 1.47 | -0.642 | -- | -6.964 | 318 | -- | -- |
| 75.89 | 0.408 | 10.4 | -0.712 | 0.487 | -- | -0.716 | -- | -0.559 | 19 | -- | -- | -- | -- |
| 77.01 | 0.411 | 10.4 | -0.696 | 0.492 | -- | -- | -- | -0.559 | 18.5 | -- | -- | -- | -- |
| 74.64 | 0.402 | 10.4 | -0.917 | -- | 0.996 | -- | -- | -0.708 | -- | 12.08 | 393 | -- | -- |
| 85.74 | 0.434 | 10.4 | -- | 0.42 | 0.496 | -- | -- | -0.533 | 20 | 24.03 | 30 | -- | -- |
| 89.59 | 0.442 | 10.4 | -0.708 | -- | -- | -- | -- | -0.57 | -- | -- | -- | -- | -- |
| 89.77 | 0.443 | 10.4 | -- | 0.501 | -- | -- | -- | -0.482 | 18.5 | -- | -- | -- | -- |
| 92.69 | 0.448 | 10.4 | -- | -- | 0.585 | -- | -- | -0.545 | -- | 24 | 294 | -- | -- |
| 102.8 | 0.473 | 10.4 | -- | -- | -- | -- | -- | -0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.54 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 7 | 62.82 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 23 | 23 |
| 8 | 63.10 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 9 | 63.12 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 15 | 63.38 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 23 | 63.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 34 | 63.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 36 | 64.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 43 | 64.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 49 | 64.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 65 | 64.29 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 17 |
| 66 | 64.29 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 80 | 64.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 107 | 64.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 117 | 64.67 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 151 | 64.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 161 | 64.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 171 | 64.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 238 | 65.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 251 | 65.18 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 253 | 65.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 265 | 65.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 273 | 65.24 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 277 | 65.26 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 282 | 65.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 296 | 65.31 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 316 | 65.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 328 | 65.40 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 335 | 65.42 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 342 | 65.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 377 | 65.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 391 | 65.54 | temperature | 30 | 30 | < th | dose independent | rect. | 23 | 23 |
| 436 | 65.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 450 | 65.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 452 | 65.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 487 | 65.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 511 | 65.79 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 522 | 65.81 | atmosphere | 1010 | 10 | < th | dose dependent | sin | 18 | NA |
| 549 | 65.86 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 23 |
| 583 | 65.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 587 | 65.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 603 | 65.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 604 | 65.96 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 8 |
| 639 | 66.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 640 | 66.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 641 | 66.03 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 652 | 66.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 653 | 66.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 654 | 66.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 685 | 66.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 686 | 66.08 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 695 | 66.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 806 | 66.20 | atmosphere | 1000 | 270 | > th | dose independent | sin | 22 | NA |
| 867 | 66.26 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 883 | 66.28 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 915 | 66.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 955 | 66.32 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |