BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0729500 Os06g0729500|J065032F18
         (80 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0729500  Conserved hypothetical protein                      140   2e-34

>Os06g0729500 Conserved hypothetical protein
          Length = 80

 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 68/80 (85%)

Query: 1  GEWWFEVGRCSGXXXXXXXXXXXXVWREASEVVKERVRTLKEAATVMSRAKVVMSNRSNR 60
          GEWWFEVGRCSG            VWREASEVVKERVRTLKEAATVMSRAKVVMSNRSNR
Sbjct: 1  GEWWFEVGRCSGEEDAAESREEESVWREASEVVKERVRTLKEAATVMSRAKVVMSNRSNR 60

Query: 61 HPDHDFFLSRQLYQEPRKNH 80
          HPDHDFFLSRQLYQEPRKNH
Sbjct: 61 HPDHDFFLSRQLYQEPRKNH 80



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.130    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,999,841
Number of extensions: 42367
Number of successful extensions: 111
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 80
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 29
Effective length of database: 14,372,887
Effective search space: 416813723
Effective search space used: 416813723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)