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Os06g0729500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0258) R2 : 0.792
β1 : 0.748 (0.0943) R2dD : 0.0298 R2D : 0.0214
β2 : 2.52 (0.0623) R2dC : 0.749 R2C : 0.74
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.402 (0.055) R2dN8 : 0.0327 R2N8 : 0.0108
σ : 0.484
deviance : 106.99
__
_____
C
peak time of C : 22.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.87 0.45 11.6 0.735 1.87 0.651 -2.06 0.81 0.404 21.3 0.17 30 -- --
93.19 0.45 11.6 0.765 1.88 0.648 -1.18 -- 0.408 21.3 0.1484 29 -- --
97.34 0.463 11.6 0.812 1.89 0.583 -- -0.539 0.441 21.6 0.17 30 -- --
98.02 0.461 11.6 0.794 1.88 0.624 -- -- 0.402 21.4 0.0712 29 -- --
175.38 0.62 11.6 0.892 -- 1.69 -- -0.77 0.491 -- 0.17 30 -- --
103.21 0.476 11.7 0.71 2.51 -- -0.986 -- 0.4 22 -- -- -- --
106.99 0.484 11.7 0.748 2.52 -- -- -- 0.402 22.1 -- -- -- --
179.23 0.626 11.6 0.868 -- 1.68 -- -- 0.483 -- 0.17 30 -- --
115.45 0.5 11.7 -- 1.92 0.595 -- -- 0.329 21.5 0.1679 23 -- --
489.54 1.03 11.6 0.781 -- -- -- -- 0.405 -- -- -- -- --
121.72 0.516 11.7 -- 2.52 -- -- -- 0.319 22.1 -- -- -- --
199.11 0.659 11.6 -- -- 1.67 -- -- 0.386 -- 0.17 30 -- --
505.61 1.05 11.6 -- -- -- -- -- 0.318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.09 radiation 1.0 30 < th dose independent rect. 23 18
3 85.29 radiation 1.0 30 < th dose dependent rect. 23 18
8 85.77 radiation 1.0 30 < th dose independent rect. 23 15
10 85.77 radiation 20.0 4320 < th dose dependent rect. 24 5
15 85.95 temperature 10.0 10 > th dose dependent rect. 23 6
16 85.99 radiation 1.0 30 < th dose dependent rect. 23 15
18 86.00 radiation 1.0 10 < th dose independent rect. 23 13
20 86.05 radiation 1.0 10 < th dose independent rect. 23 9
32 86.26 radiation 1.0 30 < th dose dependent rect. 23 13
34 86.29 radiation 1.0 30 < th dose dependent rect. 23 9
41 86.45 precipitation 0.1 10 < th dose independent rect. 5 18
42 86.45 precipitation 0.1 10 < th dose dependent rect. 5 18
46 86.68 wind 7.0 10 < th dose independent rect. 23 6
57 86.79 radiation 1.0 10 < th dose dependent rect. 23 6
58 86.82 radiation 1.0 30 < th dose dependent sin 11 NA
60 86.85 temperature 10.0 10 > th dose dependent rect. 5 18
61 86.87 radiation 1.0 30 < th dose independent sin 11 NA
67 86.88 temperature 10.0 10 > th dose independent rect. 23 6
68 86.88 temperature 30.0 10 < th dose independent rect. 23 6
69 86.88 humidity 50.0 10 > th dose independent rect. 23 6
72 86.88 atmosphere 995.0 10 > th dose independent rect. 23 6
73 86.88 radiation 1.0 10 < th dose independent rect. 23 6
78 86.88 temperature 10.0 10 > th dose independent rect. 5 18
80 86.88 atmosphere 1015.0 10 < th dose independent rect. 5 18
96 87.09 wind 9.0 10 < th dose independent rect. 5 18
98 87.11 temperature 15.0 270 > th dose dependent rect. 23 1
132 87.46 radiation 1.0 30 < th dose independent rect. 21 20
135 87.49 temperature 15.0 270 > th dose dependent rect. 22 3
136 87.56 atmosphere 1015.0 10 < th dose independent rect. 23 6
137 87.57 radiation 1.0 4320 < th dose independent rect. 24 5
138 87.57 radiation 1.0 30 < th dose dependent rect. 21 23
139 87.64 radiation 20.0 4320 < th dose dependent rect. 22 7
143 87.69 radiation 1.0 30 < th dose dependent rect. 21 20
152 87.83 precipitation 0.1 30 < th dose independent rect. 23 6
154 87.83 precipitation 0.1 30 < th dose dependent rect. 23 6
163 88.02 precipitation 0.1 270 < th dose independent rect. 1 20
164 88.02 precipitation 0.1 270 < th dose dependent rect. 1 20
165 88.03 radiation 1.0 270 < th dose dependent rect. 5 22
173 88.09 wind 7.0 90 < th dose independent rect. 21 7
178 88.12 humidity 50.0 10 > th dose dependent rect. 23 6
195 88.23 temperature 10.0 90 > th dose independent rect. 21 7
196 88.23 temperature 30.0 90 < th dose independent rect. 21 7
197 88.23 humidity 50.0 90 > th dose independent rect. 21 7
200 88.23 atmosphere 995.0 90 > th dose independent rect. 21 7
201 88.23 radiation 1.0 90 < th dose independent rect. 21 7
208 88.23 radiation 1.0 90 < th dose dependent rect. 21 7
215 88.25 radiation 1.0 270 < th dose independent rect. 6 21
220 88.32 wind 5.0 270 < th dose independent rect. 23 2
225 88.35 radiation 1.0 30 < th dose dependent rect. 21 17
232 88.40 temperature 10.0 270 > th dose dependent rect. 21 14
240 88.44 radiation 1.0 30 < th dose independent rect. 21 11
252 88.46 temperature 15.0 270 > th dose independent rect. 24 23
261 88.52 wind 1.0 90 > th dose independent rect. 23 16
275 88.58 radiation 1.0 30 < th dose dependent rect. 21 15
277 88.59 wind 1.0 30 > th dose independent rect. 23 6
279 88.60 radiation 1.0 30 < th dose dependent rect. 21 11
284 88.62 wind 9.0 1440 < th dose independent rect. 24 5
285 88.62 precipitation 0.1 90 < th dose independent rect. 21 7
286 88.62 precipitation 0.1 90 < th dose dependent rect. 21 7
342 88.78 humidity 50.0 90 > th dose dependent rect. 21 7
371 88.84 wind 1.0 90 > th dose independent rect. 23 14
384 88.96 temperature 15.0 270 > th dose independent rect. 2 19
389 88.98 precipitation 0.1 10 < th dose independent rect. 5 16
391 88.98 wind 9.0 90 < th dose dependent rect. 21 7
393 88.98 precipitation 0.1 10 < th dose dependent rect. 5 16
398 89.00 wind 9.0 10 < th dose dependent rect. 23 6
399 89.01 temperature 10.0 1440 > th dose independent rect. 24 5
402 89.01 temperature 30.0 1440 < th dose independent rect. 24 5
406 89.01 humidity 50.0 1440 > th dose independent rect. 24 5
415 89.01 atmosphere 995.0 1440 > th dose independent rect. 24 5
428 89.01 temperature 10.0 1440 > th dose independent rect. 5 19
432 89.01 radiation 1.0 270 < th dose dependent rect. 9 18
474 89.19 radiation 1.0 4320 < th dose independent rect. 22 7
476 89.20 wind 7.0 10 < th dose independent rect. 21 8
483 89.24 radiation 1.0 30 < th dose independent rect. 21 23
488 89.26 temperature 10.0 270 > th dose independent rect. 23 1
489 89.26 temperature 30.0 270 < th dose independent rect. 23 1
490 89.26 humidity 50.0 270 > th dose independent rect. 23 1
493 89.26 atmosphere 995.0 270 > th dose independent rect. 23 1
494 89.26 radiation 1.0 270 < th dose independent rect. 23 1
501 89.26 atmosphere 995.0 10 > th dose independent rect. 5 18
503 89.26 radiation 1.0 270 < th dose dependent rect. 23 1
508 89.27 temperature 10.0 270 > th dose independent rect. 21 4
509 89.27 temperature 30.0 270 < th dose independent rect. 21 4
510 89.27 humidity 50.0 270 > th dose independent rect. 21 4
513 89.27 atmosphere 995.0 270 > th dose independent rect. 21 4
514 89.27 radiation 1.0 270 < th dose independent rect. 21 4
519 89.27 wind 7.0 270 < th dose independent rect. 21 16
521 89.27 radiation 1.0 270 < th dose dependent rect. 21 4
530 89.28 precipitation 0.1 270 < th dose independent rect. 23 1
534 89.28 precipitation 0.1 270 < th dose dependent rect. 23 1
554 89.29 radiation 1.0 10 < th dose dependent rect. 21 8
559 89.32 atmosphere 1015.0 90 < th dose independent rect. 21 7
566 89.33 precipitation 0.1 270 < th dose independent rect. 21 4
570 89.33 precipitation 0.1 270 < th dose dependent rect. 21 4
580 89.36 temperature 10.0 10 > th dose independent rect. 21 8
581 89.36 temperature 30.0 10 < th dose independent rect. 21 8
582 89.36 humidity 50.0 10 > th dose independent rect. 21 8
585 89.36 atmosphere 995.0 10 > th dose independent rect. 21 8
586 89.36 radiation 1.0 10 < th dose independent rect. 21 8
591 89.36 temperature 10.0 10 > th dose independent rect. 5 16
593 89.36 atmosphere 1015.0 10 < th dose independent rect. 5 16
630 89.45 wind 9.0 90 < th dose dependent rect. 23 5
663 89.50 temperature 25.0 270 < th dose independent rect. 1 8
669 89.51 radiation 1.0 270 < th dose independent rect. 9 18
670 89.51 wind 9.0 270 < th dose dependent rect. 23 2
672 89.52 wind 9.0 270 < th dose independent rect. 1 20
677 89.53 humidity 70.0 10 > th dose dependent rect. 7 22
709 89.61 wind 9.0 10 < th dose independent rect. 5 16
713 89.62 atmosphere 1015.0 270 < th dose independent rect. 2 19
715 89.63 atmosphere 1015.0 270 < th dose independent rect. 23 1
740 89.66 temperature 15.0 1440 > th dose independent rect. 15 9
746 89.68 wind 9.0 270 < th dose dependent rect. 21 4
768 89.78 wind 1.0 270 > th dose independent rect. 21 16
811 89.87 humidity 50.0 10 > th dose dependent rect. 21 8
818 89.93 humidity 50.0 270 > th dose dependent rect. 21 4
826 89.97 temperature 10.0 270 > th dose dependent rect. 13 8
828 90.00 atmosphere 1015.0 270 < th dose independent rect. 21 4
865 90.14 temperature 15.0 270 > th dose independent rect. 13 8
929 90.23 precipitation 0.1 270 < th dose independent rect. 13 8
933 90.23 precipitation 0.1 270 < th dose dependent rect. 13 8
942 90.26 wind 1.0 270 > th dose independent rect. 21 14
950 90.28 temperature 10.0 270 > th dose independent rect. 21 16
951 90.28 atmosphere 995.0 270 > th dose independent rect. 21 16
956 90.31 temperature 30.0 10 < th dose dependent sin 17 NA
983 90.38 wind 7.0 270 < th dose independent rect. 13 8
999 90.41 temperature 20.0 270 > th dose independent rect. 11 10