BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0714000 Os06g0714000|AK069538
         (426 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0714000  Protein of unknown function UPF0183 family pro...   831   0.0  

>Os06g0714000 Protein of unknown function UPF0183 family protein
          Length = 426

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/426 (94%), Positives = 404/426 (94%)

Query: 1   MQAHRSXXXXXXXXXXXXXXXXXXXXXXRRRCEGTAMGAITLDLRPGNGVGPFTLGMPIS 60
           MQAHRS                      RRRCEGTAMGAITLDLRPGNGVGPFTLGMPIS
Sbjct: 1   MQAHRSPAMVGGGGAGAVGPPSPATVPVRRRCEGTAMGAITLDLRPGNGVGPFTLGMPIS 60

Query: 61  DAFAQIEGQPTLYDVVHVKYFDEEPLKLDFVISFPDHGFHLRFDPWSQRLRLIEIYDVKR 120
           DAFAQIEGQPTLYDVVHVKYFDEEPLKLDFVISFPDHGFHLRFDPWSQRLRLIEIYDVKR
Sbjct: 61  DAFAQIEGQPTLYDVVHVKYFDEEPLKLDFVISFPDHGFHLRFDPWSQRLRLIEIYDVKR 120

Query: 121 LQLRYAKSLIGGPSTLATFVAVYGLFGPTFPGIYDKERGIYTLFYPGLSFAFPIPSQYTN 180
           LQLRYAKSLIGGPSTLATFVAVYGLFGPTFPGIYDKERGIYTLFYPGLSFAFPIPSQYTN
Sbjct: 121 LQLRYAKSLIGGPSTLATFVAVYGLFGPTFPGIYDKERGIYTLFYPGLSFAFPIPSQYTN 180

Query: 181 LFTNGEVADLPLEFPDGTTPVTCRVSIYDSSTDSKVGVGSLMDKAVVPALPAGSLYMEEV 240
           LFTNGEVADLPLEFPDGTTPVTCRVSIYDSSTDSKVGVGSLMDKAVVPALPAGSLYMEEV
Sbjct: 181 LFTNGEVADLPLEFPDGTTPVTCRVSIYDSSTDSKVGVGSLMDKAVVPALPAGSLYMEEV 240

Query: 241 HAKLGEELLFTIGGQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRTTLCG 300
           HAKLGEELLFTIGGQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRTTLCG
Sbjct: 241 HAKLGEELLFTIGGQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRTTLCG 300

Query: 301 DYFYNYFSRGIDILFDGQTHRIKKFVLHTNFPGHSDFNSYMKCNFVIYDAEAEGTDQPGS 360
           DYFYNYFSRGIDILFDGQTHRIKKFVLHTNFPGHSDFNSYMKCNFVIYDAEAEGTDQPGS
Sbjct: 301 DYFYNYFSRGIDILFDGQTHRIKKFVLHTNFPGHSDFNSYMKCNFVIYDAEAEGTDQPGS 360

Query: 361 IPKSCITPRTKWEQVKEILGDCGRAAIQTQGSMNNPFGSTFVYGYQNIAFEVMKNGYIAT 420
           IPKSCITPRTKWEQVKEILGDCGRAAIQTQGSMNNPFGSTFVYGYQNIAFEVMKNGYIAT
Sbjct: 361 IPKSCITPRTKWEQVKEILGDCGRAAIQTQGSMNNPFGSTFVYGYQNIAFEVMKNGYIAT 420

Query: 421 VTLFQS 426
           VTLFQS
Sbjct: 421 VTLFQS 426



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,469,087
Number of extensions: 724627
Number of successful extensions: 1003
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1003
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 322
Effective length of database: 11,605,545
Effective search space: 3736985490
Effective search space used: 3736985490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)