Os06g0714000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0183 family protein.
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Os06g0714000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0183 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.17 | 0.283 | 10.9 | -0.699 | 0.158 | 0.83 | 0.0246 | 1.26 | -0.109 | 20.2 | 28.1 | 226 | -- | -- |
| 38.13 | 0.288 | 10.9 | -0.488 | 0.108 | 0.767 | -0.0756 | -- | -0.0696 | 19.9 | 29.4 | 156 | -- | -- |
| 36.17 | 0.28 | 10.9 | -0.7 | 0.158 | 0.83 | -- | 1.26 | -0.109 | 20.3 | 28 | 228 | -- | -- |
| 38.08 | 0.287 | 10.9 | -0.48 | 0.138 | 0.8 | -- | -- | -0.0677 | 19.5 | 29.4 | 168 | -- | -- |
| 37.31 | 0.284 | 10.9 | -0.669 | -- | 0.837 | -- | 1.21 | -0.106 | -- | 27.94 | 184 | -- | -- |
| 46.51 | 0.32 | 10.9 | -0.675 | 0.223 | -- | 0.329 | -- | -0.224 | 1.64 | -- | -- | -- | -- |
| 46.93 | 0.321 | 10.9 | -0.685 | 0.222 | -- | -- | -- | -0.226 | 1.39 | -- | -- | -- | -- |
| 38.86 | 0.29 | 10.9 | -0.492 | -- | 0.757 | -- | -- | -0.0784 | -- | 29.45 | 123 | -- | -- |
| 43.48 | 0.307 | 10.9 | -- | 0.189 | 1.01 | -- | -- | 0.0322 | 18.5 | 29.2 | 189 | -- | -- |
| 49.97 | 0.33 | 10.9 | -0.676 | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
| 59.3 | 0.36 | 10.9 | -- | 0.21 | -- | -- | -- | -0.149 | 1.28 | -- | -- | -- | -- |
| 44.9 | 0.312 | 10.9 | -- | -- | 0.91 | -- | -- | 0.00864 | -- | 29.03 | 131 | -- | -- |
| 62.03 | 0.368 | 10.9 | -- | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 77 | 33.49 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 85 | 33.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 96 | 33.80 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 127 | 34.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 135 | 34.20 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 136 | 34.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 167 | 34.49 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 20 |
| 306 | 35.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 397 | 35.93 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 3 | 15 |
| 403 | 35.95 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 14 |
| 426 | 36.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 427 | 36.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 478 | 36.23 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 526 | 36.44 | temperature | 25 | 270 | > th | dose independent | sin | 8 | NA |
| 561 | 36.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 582 | 36.60 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 615 | 36.69 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 20 |
| 627 | 36.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 630 | 36.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 652 | 36.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 662 | 36.81 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 690 | 36.87 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 702 | 36.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 770 | 37.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 838 | 37.14 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 863 | 37.18 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 8 |
| 866 | 37.19 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 10 |
| 867 | 37.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 890 | 37.23 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 896 | 37.23 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 906 | 37.25 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 915 | 37.26 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 14 |