BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0711100 Os06g0711100|AK100379
         (300 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0711100  Conserved hypothetical protein                      464   e-131

>Os06g0711100 Conserved hypothetical protein
          Length = 300

 Score =  464 bits (1195), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/300 (78%), Positives = 234/300 (78%)

Query: 1   MEERQAVXXXXXXXXXXFHRCADYCXXXXXXXXXXXXXXXXXXXXXXQNGTAAPQNGTAA 60
           MEERQAV          FHRCADYC                      QNGTAAPQNGTAA
Sbjct: 1   MEERQAVNPACPNAANPFHRCADYCPVPAPAAATAKPPPPPPSSRPAQNGTAAPQNGTAA 60

Query: 61  AQNGIAEQNGSTHSDGELQAKPRRRDRAGGSGGLPFYVFLREGADGDGKKVDPRCPNAPN 120
           AQNGIAEQNGSTHSDGELQAKPRRRDRAGGSGGLPFYVFLREGADGDGKKVDPRCPNAPN
Sbjct: 61  AQNGIAEQNGSTHSDGELQAKPRRRDRAGGSGGLPFYVFLREGADGDGKKVDPRCPNAPN 120

Query: 121 PFHVCTEHCAAKMAEVSRSSEGGKSPMXXXXXXXXXXXXXXXXXXXXXXXKKVDPKCPNA 180
           PFHVCTEHCAAKMAEVSRSSEGGKSPM                       KKVDPKCPNA
Sbjct: 121 PFHVCTEHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSVRSGSSKKVDPKCPNA 180

Query: 181 GNPFHECTEHCAAKMKEVGQQNKTVXXXXXXXXXXXEISVVQNWKVDPRCPNASNPFHIC 240
           GNPFHECTEHCAAKMKEVGQQNKTV           EISVVQNWKVDPRCPNASNPFHIC
Sbjct: 181 GNPFHECTEHCAAKMKEVGQQNKTVKKSSSRKKGGKEISVVQNWKVDPRCPNASNPFHIC 240

Query: 241 AQYCFDHLNETGQKDTSKPDSRKGKAVVKAEQTGEINPDCVNASNPYHKCGEHCKRKGDR 300
           AQYCFDHLNETGQKDTSKPDSRKGKAVVKAEQTGEINPDCVNASNPYHKCGEHCKRKGDR
Sbjct: 241 AQYCFDHLNETGQKDTSKPDSRKGKAVVKAEQTGEINPDCVNASNPYHKCGEHCKRKGDR 300



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,756,739
Number of extensions: 407796
Number of successful extensions: 961
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 944
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)