BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0702800 Os06g0702800|AK073948
         (365 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0702800  Hypothetical protein                                729   0.0  

>Os06g0702800 Hypothetical protein
          Length = 365

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/365 (97%), Positives = 355/365 (97%)

Query: 1   MGTSAQEPNLWKQIDDAEHYLVSGLFEQAVSTALSVSSQVHSAAMENSCDHDELLEMLEL 60
           MGTSAQEPNLWKQIDDAEHYLVSGLFEQAVSTALSVSSQVHSAAMENSCDHDELLEMLEL
Sbjct: 1   MGTSAQEPNLWKQIDDAEHYLVSGLFEQAVSTALSVSSQVHSAAMENSCDHDELLEMLEL 60

Query: 61  AGMVLVQALKELKRTSEMFIQLKTIYGSVASIPLKIFITGATMHMAGGSGSDLRPIFDEY 120
           AGMVLVQALKELKRTSEMFIQLKTIYGSVASIPLKIFITGATMHMAGGSGSDLRPIFDEY
Sbjct: 61  AGMVLVQALKELKRTSEMFIQLKTIYGSVASIPLKIFITGATMHMAGGSGSDLRPIFDEY 120

Query: 121 LAKWRYTDDQVYVLDEGKNSSSNGLVVTSVMSPEQYFEVAELYTVTFLSVVSHETATAIS 180
           LAKWRYTDDQVYVLDEGKNSSSNGLVVTSVMSPEQYFEVAELYTVTFLSVVSHETATAIS
Sbjct: 121 LAKWRYTDDQVYVLDEGKNSSSNGLVVTSVMSPEQYFEVAELYTVTFLSVVSHETATAIS 180

Query: 181 WTEKAELTEQDRQDLLRKLHALQSAANKKSTNQGAKLSESAERNLSTSQNGSISPAHEDA 240
           WTEKAELTEQDRQDLLRKLHALQSAANKKSTNQGAKLSESAERNLSTSQNGSISPAHEDA
Sbjct: 181 WTEKAELTEQDRQDLLRKLHALQSAANKKSTNQGAKLSESAERNLSTSQNGSISPAHEDA 240

Query: 241 TKSSAPTHNGNIQGLRKALPKSIQPSFQRVTNQFDPLFWWFHSFRIKFGKVHVVLPSGKV 300
           TKSSAPTHNGNIQGLRKALPKSIQPSFQRVTNQFDPLFWWFHSFRIKFGKVHVVLPSGKV
Sbjct: 241 TKSSAPTHNGNIQGLRKALPKSIQPSFQRVTNQFDPLFWWFHSFRIKFGKVHVVLPSGKV 300

Query: 301 MFLFSLLFSTLYILRRKGAALKRTAFQQISSLRRGFLDALQLAFSTQINPLXXXXXXXXX 360
           MFLFSLLFSTLYILRRKGAALKRTAFQQISSLRRGFLDALQLAFSTQINPL         
Sbjct: 301 MFLFSLLFSTLYILRRKGAALKRTAFQQISSLRRGFLDALQLAFSTQINPLAAVQQVPQA 360

Query: 361 XRASW 365
            RASW
Sbjct: 361 PRASW 365



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,548,763
Number of extensions: 396596
Number of successful extensions: 1274
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1274
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 263
Effective length of database: 11,709,973
Effective search space: 3079722899
Effective search space used: 3079722899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)