BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0699600 Os06g0699600|AK121295
         (466 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0699600  CCT domain containing protein                       666   0.0  
Os02g0148000  CCT domain containing protein                       262   4e-70

>Os06g0699600 CCT domain containing protein
          Length = 466

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/466 (74%), Positives = 349/466 (74%)

Query: 1   MASSCIPTGLRLDLEMVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKRARTP 60
           MASSCIPTGLRLDLEMVK                                   LKRARTP
Sbjct: 1   MASSCIPTGLRLDLEMVKAAAPPGGSSAAAHSSASSTLSEASNSSSSSVASLSLKRARTP 60

Query: 61  RKRPNQTYNEAAALLASMYPSVFPVIKGAGTAPPRLLGLXXXXXXXXXXXXXXXXFPVLG 120
           RKRPNQTYNEAAALLASMYPSVFPVIKGAGTAPPRLLGL                FPVLG
Sbjct: 61  RKRPNQTYNEAAALLASMYPSVFPVIKGAGTAPPRLLGLATALADDPSSSDLLPPFPVLG 120

Query: 121 NGSAAHLLRDTXXXXXXXXXXXIKSCSSPAPVSSVFREFRDAAPSPGTPXXXXXXXXXXX 180
           NGSAAHLLRDT           IKSCSSPAPVSSVFREFRDAAPSPGTP           
Sbjct: 121 NGSAAHLLRDTPPPPTPRCPAPIKSCSSPAPVSSVFREFRDAAPSPGTPDADADVTDDDY 180

Query: 181 XXXXXXXXXXXXXXXSFLAVDDGVAEGIDRIMGKLSMEKNSAAASRADAVLSSAAIHPYI 240
                          SFLAVDDGVAEGIDRIMGKLSMEKNSAAASRADAVLSSAAIHPYI
Sbjct: 181 LGELDFEDEDGFDADSFLAVDDGVAEGIDRIMGKLSMEKNSAAASRADAVLSSAAIHPYI 240

Query: 241 RSLMVLGLGFRQGRLNAGQALKRHDDESDWWMCPAIPVKEIXXXXXXXXXXXXXXXXXLQ 300
           RSLMVLGLGFRQGRLNAGQALKRHDDESDWWMCPAIPVKEI                 LQ
Sbjct: 241 RSLMVLGLGFRQGRLNAGQALKRHDDESDWWMCPAIPVKEIAAPPAPSVAMPVPVPMPLQ 300

Query: 301 ASDXXXXXXXXXXXXEIERDNAIAVGECKFGDEGTLGFDHGDAGISALKDPKIGLGLNLN 360
           ASD            EIERDNAIAVGECKFGDEGTLGFDHGDAGISALKDPKIGLGLNLN
Sbjct: 301 ASDKKKKKSKKKSLKEIERDNAIAVGECKFGDEGTLGFDHGDAGISALKDPKIGLGLNLN 360

Query: 361 TEEVLKAWCNSGSVFAGCDALESPRSSSDLHAKLADIDLFLDNNTSGVIREGSMLKLRHK 420
           TEEVLKAWCNSGSVFAGCDALESPRSSSDLHAKLADIDLFLDNNTSGVIREGSMLKLRHK
Sbjct: 361 TEEVLKAWCNSGSVFAGCDALESPRSSSDLHAKLADIDLFLDNNTSGVIREGSMLKLRHK 420

Query: 421 QKQCTPLLSNKTRYQSRKVNAECRPRVKGKYVSQASLLQQASEKER 466
           QKQCTPLLSNKTRYQSRKVNAECRPRVKGKYVSQASLLQQASEKER
Sbjct: 421 QKQCTPLLSNKTRYQSRKVNAECRPRVKGKYVSQASLLQQASEKER 466



>Os02g0148000 CCT domain containing protein
          Length = 471

 Score =  262 bits (670), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 192/486 (39%), Positives = 241/486 (49%), Gaps = 60/486 (12%)

Query: 1   MASSCIPTGLRLDLEMVKXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXLKRA 57
           M+SSCIPTGLRLDL++VK                                      LKRA
Sbjct: 1   MSSSCIPTGLRLDLDIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSSSSATSVSLKRA 60

Query: 58  RTPRKRPNQTYNEAAALLASMYPSVFPVIKGAGTA--PP--RLLGLXXXXXXXXXXXXXX 113
           R PRKRPNQ YNEAAALLAS++PSVFPV K   TA  PP  +L GL              
Sbjct: 61  RAPRKRPNQAYNEAAALLASIHPSVFPVKKSPKTASRPPTRQLSGL---SAVFDPSSDLL 117

Query: 114 XXFPVLGNGSAAHLLRDTXXXXXXXXXXXIKSCSSPAPVSSVFREFRDAAP-SPGTPXXX 172
              PVL +  AA LLRDT            ++CSSPAPVSS FREFRD AP SP +P   
Sbjct: 118 PPLPVLAD--AAFLLRDTPPTPR-------QNCSSPAPVSSAFREFRDPAPLSPASPHTT 168

Query: 173 XXXXXXXXXXXXXXXXXXXXXXXSFLAVDDGVAEGIDRIMGKLSMEKNSAAASRA-DAVL 231
                                  +   +        D IMG L++E N+AAA+ + D++L
Sbjct: 169 DEPGELDFDDDCFLDVDEAAADGAAGGI--------DGIMGSLTVETNTAAATTSDDSIL 220

Query: 232 SSAAIHPYIRSLMV--------LGLGFRQG-RLNAGQALKRHDDESDWWMCPAIPVKEIX 282
           SS+ IHPY+RSLMV        LGLG R G R N  +ALKR DD+  WWM PA+PVK+I 
Sbjct: 221 SSSGIHPYLRSLMVVGLAGRFELGLGSRHGARPNLNRALKRRDDDGAWWMWPAVPVKDIT 280

Query: 283 XXXXXXXXXXXXXXXXLQASDXXXXXXXXXXXX-------------------EIERDNAI 323
                             AS+                               E E + + 
Sbjct: 281 VAPPPPTPTPTPPRPQGTASNTTAAMPSPPSAPEKKKSKKKKVVKVEKVMAREKEEEESP 340

Query: 324 AVGECKFGDEGTLGFDHGDAGISALKDPKIGLGLNLNTEEVLKAWCNSGSVFAGCDALES 383
               CK  +      D G+   +    PK GLGL L+ ++VLKAW   GS+FA   A ES
Sbjct: 341 PDARCKEEEAADGTVDAGNGDGAPTMAPKTGLGLKLDADDVLKAWSGKGSMFADGGAPES 400

Query: 384 PRSSSDLHAKLADIDLFLDN-NTSGVIREGSMLKLRHKQKQCTPLLSNKTRYQSRKVNAE 442
           P+S++++ AKLADIDLF +N N +G IRE S+  +R+K+K+ T L S K RYQ RKVNA+
Sbjct: 401 PKSAAEVRAKLADIDLFPENGNGAGGIREASV--MRYKEKRRTRLFSKKIRYQVRKVNAD 458

Query: 443 CRPRVK 448
           CRPR+K
Sbjct: 459 CRPRMK 464



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,913,182
Number of extensions: 408059
Number of successful extensions: 886
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 3
Length of query: 466
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 362
Effective length of database: 11,605,545
Effective search space: 4201207290
Effective search space used: 4201207290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)