BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0691900 Os06g0691900|Os06g0691900
(380 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0691900 762 0.0
Os06g0110400 654 0.0
Os06g0645100 377 e-105
Os06g0688400 234 8e-62
>Os06g0691900
Length = 380
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/380 (96%), Positives = 368/380 (96%)
Query: 1 MARKGKDLISQLPDDILVHILSMVRYKEAVRTTVVSRRWKHLHTKLPAVSFTMSVLGLQG 60
MARKGKDLISQLPDDILVHILSMVRYKEAVRTTVVSRRWKHLHTKLPAVSFTMSVLGLQG
Sbjct: 1 MARKGKDLISQLPDDILVHILSMVRYKEAVRTTVVSRRWKHLHTKLPAVSFTMSVLGLQG 60
Query: 61 SPLSTQSKQRVESMARTLRRRCAGPDHDTVQRLRLSYRKDVPMECRYADEFIXXXXXXXX 120
SPLSTQSKQRVESMARTLRRRCAGPDHDTVQRLRLSYRKDVPMECRYADEFI
Sbjct: 61 SPLSTQSKQRVESMARTLRRRCAGPDHDTVQRLRLSYRKDVPMECRYADEFIALAAASSL 120
Query: 121 XXXXNCPKNLRNNDAGPWSLHLPAATPCLSMESCWYSVRPPHVHGPGASALKSLTFKDSF 180
NCPKNLRNNDAGPWSLHLPAATPCLSMESCWYSVRPPHVHGPGASALKSLTFKDSF
Sbjct: 121 VLFLNCPKNLRNNDAGPWSLHLPAATPCLSMESCWYSVRPPHVHGPGASALKSLTFKDSF 180
Query: 181 MVLHPGYLQDTAFPSLEELQISGCTLSGSIEITSATMPRLKHLRIVDVSIISLGTEAAIT 240
MVLHPGYLQDTAFPSLEELQISGCTLSGSIEITSATMPRLKHLRIVDVSIISLGTEAAIT
Sbjct: 181 MVLHPGYLQDTAFPSLEELQISGCTLSGSIEITSATMPRLKHLRIVDVSIISLGTEAAIT 240
Query: 241 VLADELATLRVSCHDGGKPDPPASHEMLCVETPFRASFTEYSCFRLRAPKLRVFEWRCSY 300
VLADELATLRVSCHDGGKPDPPASHEMLCVETPFRASFTEYSCFRLRAPKLRVFEWRCSY
Sbjct: 241 VLADELATLRVSCHDGGKPDPPASHEMLCVETPFRASFTEYSCFRLRAPKLRVFEWRCSY 300
Query: 301 AKEVRVDAVGRLSDVVIELFAGRLPRCYNEAKRFLQMEDCDKLMKHILQGIMPGRWKYVQ 360
AKEVRVDAVGRLSDVVIELFAGRLPRCYNEAKRFLQMEDCDKLMKHILQGIMPGRWKYVQ
Sbjct: 301 AKEVRVDAVGRLSDVVIELFAGRLPRCYNEAKRFLQMEDCDKLMKHILQGIMPGRWKYVQ 360
Query: 361 RNFIECDELRLRCEITEYDM 380
RNFIECDELRLRCEITEYDM
Sbjct: 361 RNFIECDELRLRCEITEYDM 380
>Os06g0110400
Length = 369
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/360 (88%), Positives = 329/360 (91%), Gaps = 1/360 (0%)
Query: 3 RKGKDLISQLPDDILVHILSMVRYKEAVRTTVVSRRWKHLHTKLPAVSFTMSVLGLQGSP 62
RKGKDLISQLPDDIL+HILSMVRYKEAVRT VSRRWKHLHTKLPA+SF MSVLG QGS
Sbjct: 4 RKGKDLISQLPDDILLHILSMVRYKEAVRTAAVSRRWKHLHTKLPALSFIMSVLGAQGSS 63
Query: 63 LSTQSKQRVESMARTLRRRCAGPDHDTVQRLRLSYRKDVPMECRYADEFIXXXXXXXXXX 122
LSTQS+QRV+SMARTLRRRCAGPD DTV+RL L+YRKDVPMECRYADEFI
Sbjct: 64 LSTQSRQRVDSMARTLRRRCAGPDRDTVKRLCLAYRKDVPMECRYADEFIALAAASSLGL 123
Query: 123 XXNCPKNLRNNDAGPWSLHLPAATPCLSMESCWYSVRPPHVHGPGASALKSLTFKDSFMV 182
NCPKNLRN+DAGPWSLHLPAAT CLSMESCWYSVRPPHVHGPGASALKSLTFKDSFMV
Sbjct: 124 FLNCPKNLRNDDAGPWSLHLPAATACLSMESCWYSVRPPHVHGPGASALKSLTFKDSFMV 183
Query: 183 LHPGYLQDTAFPSLEELQISGCTLSGSIEITSATMPRLKHLRIVDVSIISLGTEAAITVL 242
LHPGYLQDTAFPSLEEL ISGCTLSGSIEITSATMPRLKHLRI DVS++SLGT AAI VL
Sbjct: 184 LHPGYLQDTAFPSLEELHISGCTLSGSIEITSATMPRLKHLRIADVSVVSLGTAAAIAVL 243
Query: 243 ADELATLRVSCHDGGKPDPPASHEMLCVETPFRASFTEYSCFRLRAPKLRVFEWRCSYAK 302
ADEL TLRVSCHDGGKPDPP+SHEMLCVET FRASFTEYS FRLRAPKLRVF+WRC YAK
Sbjct: 244 ADELTTLRVSCHDGGKPDPPSSHEMLCVETLFRASFTEYSYFRLRAPKLRVFDWRCCYAK 303
Query: 303 EVRVDAVGR-LSDVVIELFAGRLPRCYNEAKRFLQMEDCDKLMKHILQGIMPGRWKYVQR 361
EVRVDAVGR LSDVVIELFAGRLPRCYNEAKRFLQMEDCDKLM ILQGIMPGRWKYVQR
Sbjct: 304 EVRVDAVGRHLSDVVIELFAGRLPRCYNEAKRFLQMEDCDKLMNDILQGIMPGRWKYVQR 363
>Os06g0645100
Length = 421
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/390 (53%), Positives = 261/390 (66%), Gaps = 23/390 (5%)
Query: 6 KDLISQLPDDILVHILSMVRYKEAVRTTVVSRRWKHLHTKLPAVSFTMSVLGLQGSPLST 65
+DLIS+LPDDILV ILSM Y +A R VSRRW+HLHT+LP V F+MSV GL +PL
Sbjct: 38 EDLISKLPDDILVPILSMCPYADAERAAAVSRRWQHLHTRLPNVRFSMSVQGLL-APLGE 96
Query: 66 QSKQRVESMARTLRRRCAGPDHDTVQRLRLSYRKDVPMECRYADEFIXXXXXXXXXXXXN 125
SK RV+SMARTL+RRC G DTV+ L + YRKDVP ECRYA+EF+
Sbjct: 97 SSKPRVQSMARTLQRRCCG-GGDTVKTLHIGYRKDVPFECRYAEEFVALANATRLELGVQ 155
Query: 126 CPKNLRNNDAGPWSLHLPAATPCLSMESCWYSVRPPHVHGPGASALKSLTFKDSFMVLHP 185
C + L + DAG WSL LP AT L + WY+VRPP +HGPG ++L+ L ++ VL P
Sbjct: 156 CARGLPDEDAGEWSLELPPATAELQLRLYWYAVRPPGLHGPGVASLRWLA-RNGLAVLRP 214
Query: 186 -GYLQDTA--FPSLEELQISGCTL--SGSIEITSATMPRLKHLRIVDVSIISLGTEAAIT 240
+L FP+LEEL I CTL G I+ITSA MPRL+ L + DV+++S T+A I
Sbjct: 215 ESFLSGGGVVFPALEELHIVKCTLPAGGGIDITSAAMPRLRRLIVTDVAVMSAATKAGIA 274
Query: 241 VLADELATLRVSCHDGGKP----DPPASHEMLCVETPFRASFTEYSCFRLRAPKLRVFEW 296
VLADELA LRVSC +P DP A H ++ FRA FT YSC R+RAP+LRVFEW
Sbjct: 275 VLADELAELRVSCRCDTEPMATSDPAAYH----LKPRFRALFTRYSCVRVRAPRLRVFEW 330
Query: 297 RCSYAKEVRVDAVGRLSDVVIELFAGRLPRCYNEAKRFLQMEDCDKLMKHILQGIMPG-- 354
RC +A EVRV++VGRLSDV +EL AGRLPR ++E + L +EDCDKLMK IL+G++PG
Sbjct: 331 RCCFADEVRVESVGRLSDVAVELAAGRLPRLWDEESKSLSVEDCDKLMKGILRGLLPGLR 390
Query: 355 --RWKYVQRNFIECDELRLRCEIT---EYD 379
W +VQR ++ DE L EI+ +YD
Sbjct: 391 PRSWDWVQRKCVKRDERWLSFEISSAPKYD 420
>Os06g0688400
Length = 253
Score = 234 bits (597), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 126/232 (54%), Positives = 151/232 (65%), Gaps = 5/232 (2%)
Query: 1 MARKGKDLISQLPDDILVHILSMVRYKEAVRTTVVSRRWKHLHTKLPAVSFTMSVLGLQG 60
+ K +DLIS+LPDDIL+HILSM Y +AVRT VSRRW+HLHT+LP V F MSVLG
Sbjct: 24 VTEKQEDLISKLPDDILLHILSMCPYHDAVRTAAVSRRWQHLHTRLPNVRFRMSVLGNLA 83
Query: 61 SPLSTQSKQRVESMARTLRRRC--AGPDHDTVQRLRLSYRKDVPMECRYADEFIXXXXXX 118
S L S+ RV+SM R LR+RC G HDT++ L + YRKDVP ECRYA+EF+
Sbjct: 84 S-LGESSEPRVQSMERMLRQRCHDDGGLHDTIETLHIGYRKDVPFECRYANEFVALANAS 142
Query: 119 XXXXXXNCPKNLRNNDAGPWSLHLPAATPCLSMESCWYSVRPPHVHGPGASALKSLTFKD 178
C + L + DAG WSL LP AT L + WY+VRPP V GPG ++L+ L D
Sbjct: 143 RLELHVQCKRGLPDEDAGVWSLELPPATTELELGLYWYAVRPPRVRGPGVTSLRWLAL-D 201
Query: 179 SFMVLHPG-YLQDTAFPSLEELQISGCTLSGSIEITSATMPRLKHLRIVDVS 229
VL P +L FPSLEEL I CTL SI+ITS TMPRLK LRI DV+
Sbjct: 202 GLTVLRPSDFLSTVVFPSLEELHIVDCTLPASIDITSDTMPRLKRLRITDVT 253
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,191,559
Number of extensions: 534813
Number of successful extensions: 2435
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2436
Number of HSP's successfully gapped: 4
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 157 (65.1 bits)