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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0691900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0355) R2 : 0.00505
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.114 (0.0748) R2dN8 : 0.00652 R2N8 : 0.00505
σ : 0.669
deviance : 205.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.96 0.636 3.16 -0.441 0.324 0.323 0.123 -0.802 -0.311 11.2 1005 351 -- --
185.93 0.635 3.16 -0.419 0.318 0.313 0.0383 -- -0.32 11.4 1006 367 -- --
183.03 0.63 3.16 -0.435 0.323 0.323 -- -0.791 -0.31 11.2 1005 349 -- --
185.91 0.635 3.16 -0.427 0.321 0.317 -- -- -0.306 11.3 1006 367 -- --
189.49 0.641 3.16 -0.441 -- 0.34 -- -0.779 -0.315 -- 1005 403 -- --
193.05 0.651 3.13 -0.432 0.352 -- 0.0647 -- -0.16 10.8 -- -- -- --
193.06 0.651 3.13 -0.429 0.351 -- -- -- -0.16 10.8 -- -- -- --
192.19 0.646 3.17 -0.419 -- 0.341 -- -- -0.32 -- 1006 345 -- --
190.46 0.643 3.16 -- 0.324 0.33 -- -- -0.289 11 1006 453 -- --
200.7 0.662 3.14 -0.436 -- -- -- -- -0.162 -- -- -- -- --
197.92 0.658 3.12 -- 0.355 -- -- -- -0.112 10.9 -- -- -- --
196.77 0.653 3.17 -- -- 0.364 -- -- -0.31 -- 1006 451 -- --
205.72 0.669 3.12 -- -- -- -- -- -0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.47 temperature 10.0 10 > th dose dependent rect. 12 23
2 177.56 atmosphere 1005.0 30 > th dose independent rect. 11 1
3 177.66 temperature 10.0 90 > th dose dependent rect. 12 23
7 178.05 humidity 80.0 720 > th dose independent rect. 22 2
10 178.46 atmosphere 995.0 10 > th dose dependent rect. 11 1
12 178.62 radiation 40.0 90 < th dose dependent rect. 10 3
18 179.18 temperature 30.0 90 < th dose dependent rect. 10 1
20 179.23 radiation 30.0 90 < th dose independent rect. 10 3
25 179.49 radiation 40.0 90 < th dose independent rect. 11 1
28 179.52 atmosphere 1005.0 90 > th dose independent rect. 19 17
30 179.55 temperature 30.0 90 < th dose dependent rect. 10 3
32 179.59 atmosphere 1005.0 90 > th dose independent rect. 19 19
38 179.68 temperature 10.0 30 > th dose dependent rect. 6 14
43 179.75 radiation 40.0 270 < th dose dependent rect. 8 4
52 179.92 atmosphere 1005.0 270 > th dose independent rect. 16 20
53 179.92 temperature 30.0 270 < th dose dependent rect. 8 4
58 180.00 temperature 30.0 90 < th dose independent rect. 10 2
71 180.16 radiation 10.0 90 < th dose dependent rect. 10 3
79 180.29 wind 1.0 10 > th dose independent rect. 11 1
82 180.35 temperature 10.0 270 > th dose dependent rect. 3 14
85 180.38 temperature 10.0 720 > th dose dependent rect. 3 6
88 180.41 radiation 1.0 90 > th dose independent rect. 12 22
93 180.55 atmosphere 1005.0 90 > th dose independent rect. 10 20
97 180.61 temperature 10.0 10 > th dose independent rect. 11 1
100 180.61 atmosphere 1015.0 10 < th dose independent rect. 11 1
101 180.61 precipitation 0.1 10 < th dose independent rect. 11 1
103 180.61 temperature 10.0 10 > th dose independent rect. 12 23
104 180.61 precipitation 0.1 10 < th dose dependent rect. 11 1
112 180.63 temperature 10.0 1440 > th dose independent rect. 12 1
116 180.63 atmosphere 995.0 1440 > th dose independent rect. 12 1
117 180.63 temperature 10.0 1440 > th dose independent rect. 13 23
143 180.76 wind 9.0 30 < th dose independent rect. 12 23
145 180.78 wind 9.0 30 < th dose independent rect. 11 1
147 180.80 radiation 1.0 30 > th dose independent rect. 11 1
153 180.83 radiation 40.0 10 < th dose independent rect. 12 1
157 180.85 precipitation 0.1 30 < th dose independent rect. 12 23
158 180.85 precipitation 0.1 30 < th dose dependent rect. 12 23
163 180.89 radiation 1.0 10 < th dose independent rect. 6 8
172 180.93 temperature 10.0 30 > th dose dependent rect. 21 23
175 180.95 radiation 1.0 10 < th dose dependent rect. 6 8
177 180.96 atmosphere 1005.0 270 > th dose independent rect. 8 4
178 180.98 humidity 80.0 1440 < th dose independent rect. 23 2
181 180.98 atmosphere 1015.0 10 < th dose dependent rect. 12 23
185 181.03 radiation 1.0 90 < th dose independent rect. 10 3
204 181.14 atmosphere 1015.0 30 < th dose independent rect. 12 23
216 181.18 humidity 80.0 1440 < th dose dependent rect. 23 2
226 181.24 temperature 10.0 720 > th dose dependent rect. 21 12
231 181.29 atmosphere 1005.0 720 > th dose independent rect. 24 3
235 181.30 atmosphere 995.0 30 > th dose dependent rect. 20 16
239 181.31 radiation 40.0 10 < th dose dependent rect. 12 1
242 181.34 temperature 30.0 720 < th dose dependent rect. 24 3
267 181.44 atmosphere 995.0 30 > th dose independent rect. 12 23
274 181.50 atmosphere 1005.0 270 > th dose independent rect. 23 13
283 181.54 humidity 50.0 90 > th dose dependent rect. 10 2
291 181.59 temperature 10.0 720 > th dose dependent rect. 21 3
298 181.61 humidity 50.0 720 > th dose dependent rect. 21 3
301 181.62 radiation 20.0 270 < th dose independent rect. 8 19
304 181.63 radiation 1.0 10 < th dose independent rect. 11 3
312 181.63 radiation 1.0 10 < th dose dependent rect. 11 3
324 181.65 atmosphere 1005.0 270 > th dose independent rect. 7 22
371 181.83 wind 9.0 30 < th dose dependent rect. 11 1
399 181.96 temperature 30.0 270 < th dose independent rect. 8 4
404 181.99 humidity 90.0 10 < th dose independent rect. 11 1
418 182.01 temperature 20.0 30 > th dose dependent rect. 3 17
421 182.04 atmosphere 1005.0 270 > th dose independent rect. 23 22
444 182.06 atmosphere 995.0 10 > th dose dependent rect. 11 19
504 182.25 atmosphere 1005.0 90 > th dose independent rect. 10 23
529 182.29 temperature 10.0 720 > th dose dependent rect. 21 18
533 182.30 humidity 50.0 10 > th dose independent rect. 12 23
538 182.31 humidity 50.0 270 > th dose dependent rect. 21 11
559 182.39 humidity 50.0 30 > th dose independent rect. 11 1
597 182.42 radiation 40.0 270 < th dose dependent rect. 8 19
598 182.42 temperature 30.0 270 < th dose dependent rect. 7 21
600 182.43 temperature 30.0 720 < th dose dependent rect. 24 5
685 182.62 atmosphere 995.0 270 > th dose dependent rect. 8 4
708 182.68 radiation 1.0 90 > th dose independent rect. 4 1
719 182.68 radiation 1.0 90 > th dose dependent rect. 4 1
732 182.68 wind 9.0 90 < th dose dependent rect. 12 22
776 182.78 atmosphere 1005.0 270 < th dose independent rect. 23 20
779 182.79 wind 7.0 1440 > th dose dependent rect. 18 1
807 182.84 atmosphere 995.0 720 > th dose dependent rect. 24 3
812 182.85 temperature 30.0 720 < th dose dependent rect. 24 12
821 182.86 temperature 30.0 90 < th dose dependent rect. 19 18
825 182.87 temperature 30.0 90 < th dose dependent rect. 10 20
826 182.88 atmosphere 995.0 10 > th dose dependent rect. 20 10
840 182.91 radiation 30.0 270 < th dose independent rect. 21 11
864 182.96 radiation 1.0 270 < th dose independent rect. 10 1
908 183.03 atmosphere 995.0 270 > th dose dependent rect. 23 13
923 183.07 wind 9.0 270 < th dose independent rect. 21 11
926 183.08 radiation 1.0 720 > th dose independent rect. 4 1
941 183.08 radiation 1.0 720 > th dose dependent rect. 4 1
992 183.15 temperature 10.0 270 > th dose independent rect. 21 11
993 183.15 temperature 30.0 270 < th dose independent rect. 21 11
994 183.15 humidity 50.0 270 > th dose independent rect. 21 11
996 183.15 atmosphere 995.0 270 > th dose independent rect. 21 11
997 183.15 temperature 10.0 270 > th dose independent rect. 8 13