BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0691600 Os06g0691600|AK070430
         (170 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0691600  EF-Hand type domain containing protein              234   3e-62

>Os06g0691600 EF-Hand type domain containing protein
          Length = 170

 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 126/152 (82%)

Query: 19  LSVDFEALSYISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEVXXXXXXXXXX 78
           LSVDFEALSYISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEV          
Sbjct: 19  LSVDFEALSYISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEVRDMLARADAD 78

Query: 79  XXGKLSVEELLDVMNXXXXXXXXXXXXXXSAVPALESAAGPDGVLGADELARLLSVMGTA 138
             GKLSVEELLDVMN              SAVPALESAAGPDGVLGADELARLLSVMGTA
Sbjct: 79  RDGKLSVEELLDVMNAGQLGLGALGALLQSAVPALESAAGPDGVLGADELARLLSVMGTA 138

Query: 139 SVEDCMEIIACMDGDGDGAISVEEFRLMAQLL 170
           SVEDCMEIIACMDGDGDGAISVEEFRLMAQLL
Sbjct: 139 SVEDCMEIIACMDGDGDGAISVEEFRLMAQLL 170



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.134    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,117,177
Number of extensions: 134717
Number of successful extensions: 727
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 734
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)