BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0688100 Os06g0688100|AK101144
         (622 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0688100  RNA polymerase I specific transcription initia...  1201   0.0  

>Os06g0688100 RNA polymerase I specific transcription initiation factor RRN3
           family protein
          Length = 622

 Score = 1201 bits (3108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/612 (97%), Positives = 596/612 (97%)

Query: 1   MGAELRRDDMEVAEEDISDSQAFRFVEHVLQSVRMDPFQVDLRDKEEYDSLLSIVDSSKK 60
           MGAELRRDDMEVAEEDISDSQAFRFVEHVLQSVRMDPFQVDLRDKEEYDSLLSIVDSSKK
Sbjct: 1   MGAELRRDDMEVAEEDISDSQAFRFVEHVLQSVRMDPFQVDLRDKEEYDSLLSIVDSSKK 60

Query: 61  RSYDDEALLVTTLKALSEAVSKIDIMYHHALLNNIFTMSIWYLNSDTRDALLSLITRLAA 120
           RSYDDEALLVTTLKALSEAVSKIDIMYHHALLNNIFTMSIWYLNSDTRDALLSLITRLAA
Sbjct: 61  RSYDDEALLVTTLKALSEAVSKIDIMYHHALLNNIFTMSIWYLNSDTRDALLSLITRLAA 120

Query: 121 VADQFLRECLQMLVNNFTPPGSLTAFIGQPRWLARKKEIYSQLHESLRMISDTVPLAPRM 180
           VADQFLRECLQMLVNNFTPPGSLTAFIGQPRWLARKKEIYSQLHESLRMISDTVPLAPRM
Sbjct: 121 VADQFLRECLQMLVNNFTPPGSLTAFIGQPRWLARKKEIYSQLHESLRMISDTVPLAPRM 180

Query: 181 LKDIIDRSMPKLFDNKAKMVSFVECMLGLDNDRMGDLIGALLLAKVVDLLTELDVNITWE 240
           LKDIIDRSMPKLFDNKAKMVSFVECMLGLDNDRMGDLIGALLLAKVVDLLTELDVNITWE
Sbjct: 181 LKDIIDRSMPKLFDNKAKMVSFVECMLGLDNDRMGDLIGALLLAKVVDLLTELDVNITWE 240

Query: 241 DILQDEHNKGIFDMXXXXXXXXXXXXXXXXTKALFGGNACAEKLDGLMVVFCEHLKSCKE 300
           DILQDEHNKGIFDM                TKALFGGNACAEKLDGLMVVFCEHLKSCKE
Sbjct: 241 DILQDEHNKGIFDMELEDLGEDEDSLGQEGTKALFGGNACAEKLDGLMVVFCEHLKSCKE 300

Query: 301 HGRLPQEFDILKTIFRASVLRVHKSKFAQFIMFYACSLDPEICGLEFALFLSDIFIKKEE 360
           HGRLPQEFDILKTIFRASVLRVHKSKFAQFIMFYACSLDPEICGLEFALFLSDIFIKKEE
Sbjct: 301 HGRLPQEFDILKTIFRASVLRVHKSKFAQFIMFYACSLDPEICGLEFALFLSDIFIKKEE 360

Query: 361 DSISRMSAVSYVGSYLSRARFISADTVVGILKRLVDWCVDYCDLQNNIRITTKPINHQIF 420
           DSISRMSAVSYVGSYLSRARFISADTVVGILKRLVDWCVDYCDLQNNIRITTKPINHQIF
Sbjct: 361 DSISRMSAVSYVGSYLSRARFISADTVVGILKRLVDWCVDYCDLQNNIRITTKPINHQIF 420

Query: 421 YASCQAVMYILCFRLRSIMDYPNLKAQLFNMPFGYILTHPLEPLKVCLPSIVDEFLRQAK 480
           YASCQAVMYILCFRLRSIMDYPNLKAQLFNMPFGYILTHPLEPLKVCLPSIVDEFLRQAK
Sbjct: 421 YASCQAVMYILCFRLRSIMDYPNLKAQLFNMPFGYILTHPLEPLKVCLPSIVDEFLRQAK 480

Query: 481 AARLFNASVHSEFEDALESDLSKTFGGMNRLDMFFPFDPYLLKESDRYMRPNFEYWSMVK 540
           AARLFNASVHSEFEDALESDLSKTFGGMNRLDMFFPFDPYLLKESDRYMRPNFEYWSMVK
Sbjct: 481 AARLFNASVHSEFEDALESDLSKTFGGMNRLDMFFPFDPYLLKESDRYMRPNFEYWSMVK 540

Query: 541 TTYNNYNSDVDDELVDLDAPEMNVGSLDDHVEIDLNSDDDLEYSMNKMSITPNRSFFHQI 600
           TTYNNYNSDVDDELVDLDAPEMNVGSLDDHVEIDLNSDDDLEYSMNKMSITPNRSFFHQI
Sbjct: 541 TTYNNYNSDVDDELVDLDAPEMNVGSLDDHVEIDLNSDDDLEYSMNKMSITPNRSFFHQI 600

Query: 601 MANSDTGLTMPA 612
           MANSDTGLTMPA
Sbjct: 601 MANSDTGLTMPA 612



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,782,233
Number of extensions: 744305
Number of successful extensions: 1612
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 515
Effective length of database: 11,448,903
Effective search space: 5896185045
Effective search space used: 5896185045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)