Os06g0688100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase I specific transcription initiation factor RRN3 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0688100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA polymerase I specific transcription initiation factor RRN3 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.96 | 0.257 | 13.5 | 1.33 | 0.498 | 0.949 | 0.273 | 0.407 | 0.68 | 2.21 | 20.05 | 3245 | -- | -- |
| 29.88 | 0.255 | 13.5 | 1.34 | 0.521 | 0.789 | 0.325 | -- | 0.664 | 1.93 | 21 | 3095 | -- | -- |
| 30.23 | 0.256 | 13.5 | 1.33 | 0.498 | 0.947 | -- | 0.415 | 0.679 | 2.12 | 20.08 | 3244 | -- | -- |
| 29.91 | 0.255 | 13.5 | 1.37 | 0.49 | 0.75 | -- | -- | 0.658 | 2.06 | 21.5 | 3056 | -- | -- |
| 42.24 | 0.303 | 13.5 | 1.45 | -- | 0.809 | -- | 0.21 | 0.687 | -- | 21.43 | 2513 | -- | -- |
| 44.37 | 0.312 | 13.4 | 1.77 | 0.508 | -- | 0.243 | -- | 0.894 | 2.13 | -- | -- | -- | -- |
| 44.59 | 0.313 | 13.4 | 1.76 | 0.507 | -- | -- | -- | 0.892 | 2.07 | -- | -- | -- | -- |
| 42.24 | 0.303 | 13.5 | 1.39 | -- | 0.788 | -- | -- | 0.656 | -- | 21.53 | 2517 | -- | -- |
| 40.26 | 0.296 | 13.5 | -- | 0.539 | 1.49 | -- | -- | 0.483 | 2.46 | 18.49 | 46552 | -- | -- |
| 60.03 | 0.362 | 13.4 | 1.79 | -- | -- | -- | -- | 0.904 | -- | -- | -- | -- | -- |
| 126.63 | 0.526 | 13.5 | -- | 0.541 | -- | -- | -- | 0.696 | 2.15 | -- | -- | -- | -- |
| 51.9 | 0.336 | 13.6 | -- | -- | 1.54 | -- | -- | 0.347 | -- | 18.27 | 47520 | -- | -- |
| 144.12 | 0.56 | 13.5 | -- | -- | -- | -- | -- | 0.706 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.70 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 2 | 29.92 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 3 | 30.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 5 | 30.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 7 | 30.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 9 | 30.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 14 | 30.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 20 | 30.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 40 | 30.62 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 42 | 30.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 62 | 30.70 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 144 | 31.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 160 | 31.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 184 | 31.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 192 | 31.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 204 | 31.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 219 | 31.18 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 229 | 31.21 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 256 | 31.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 319 | 31.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 325 | 31.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 22 |
| 357 | 31.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 378 | 31.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 380 | 31.41 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 397 | 31.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 400 | 31.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 426 | 31.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 437 | 31.47 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 448 | 31.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 456 | 31.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 521 | 31.57 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 525 | 31.58 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 638 | 31.67 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 658 | 31.69 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 683 | 31.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 709 | 31.73 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 726 | 31.74 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 14 |
| 734 | 31.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 815 | 31.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 880 | 31.87 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 891 | 31.88 | humidity | 60 | 43200 | < th | dose dependent | sin | 5 | NA |
| 920 | 31.90 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |