BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0686400 Os06g0686400|AK069702
         (125 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0686400  Plant lipid transfer protein/Par allergen fami...   194   9e-51
Os06g0711900  Plant lipid transfer/seed storage/trypsin-alph...    73   4e-14

>Os06g0686400 Plant lipid transfer protein/Par allergen family protein
          Length = 125

 Score =  194 bits (494), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 95/99 (95%), Positives = 95/99 (95%)

Query: 27  QSSPSTPSCASKLVPCAQYMNGTDTPPAACCDPLKEAVKNELKCLCDLYASPEIFKAFNI 86
           QSSPSTPSCASKLVPCAQYMNGTDTPPAACCDPLKEAVKNELKCLCDLYASPEIFKAFNI
Sbjct: 27  QSSPSTPSCASKLVPCAQYMNGTDTPPAACCDPLKEAVKNELKCLCDLYASPEIFKAFNI 86

Query: 87  NISDALRLSTRCGISQTTSMCPGNQLILPXXXXFYPLFF 125
           NISDALRLSTRCGISQTTSMCPGNQLILP    FYPLFF
Sbjct: 87  NISDALRLSTRCGISQTTSMCPGNQLILPSSSSFYPLFF 125



>Os06g0711900 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 161

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 28  SSPSTPSCASKLVPCAQYMNGTDTPP-AACCDPLKEAVKNELKCLCDLYASPEIFKAFNI 86
           ++   PSCASKLVPC  Y+N T  PP A+CC PL+EA  NE  CLC +  +    +AF +
Sbjct: 36  AAAGVPSCASKLVPCGGYLNATAAPPPASCCGPLREAAANETACLCAILTNKAALQAFGV 95

Query: 87  NISDALRLSTRCGIS 101
                L L+ RCG++
Sbjct: 96  APEQGLLLAKRCGVT 110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,465,945
Number of extensions: 116742
Number of successful extensions: 366
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 3
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)