BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0685400 Os06g0685400|AK100318
         (64 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0685400  Conserved hypothetical protein                      132   8e-32
Os08g0433000  Arginine decarboxylase family protein               111   1e-25

>Os06g0685400 Conserved hypothetical protein
          Length = 64

 Score =  132 bits (331), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MQEKANATCRCCLATTAEAQAYGLQRQWICCREPDAQAFAMADLMKEPTILCLPALRWFE 60
          MQEKANATCRCCLATTAEAQAYGLQRQWICCREPDAQAFAMADLMKEPTILCLPALRWFE
Sbjct: 1  MQEKANATCRCCLATTAEAQAYGLQRQWICCREPDAQAFAMADLMKEPTILCLPALRWFE 60

Query: 61 KLCH 64
          KLCH
Sbjct: 61 KLCH 64



>Os08g0433000 Arginine decarboxylase family protein
          Length = 220

 Score =  111 bits (278), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/56 (91%), Positives = 52/56 (92%)

Query: 1  MQEKANATCRCCLATTAEAQAYGLQRQWICCREPDAQAFAMADLMKEPTILCLPAL 56
          MQEKANATCRCC AT AEAQAY LQRQWICCREPDAQAFA+ADLMKEPTILCLP L
Sbjct: 1  MQEKANATCRCCSATPAEAQAYSLQRQWICCREPDAQAFAIADLMKEPTILCLPKL 56



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.133    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,183,339
Number of extensions: 59783
Number of successful extensions: 155
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 64
Length of database: 17,035,801
Length adjustment: 36
Effective length of query: 28
Effective length of database: 15,156,097
Effective search space: 424370716
Effective search space used: 424370716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)