Os06g0685400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0685400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.45 | 0.522 | 2.91 | 0.322 | 0.199 | 5.27 | 0.359 | 10.7 | -0.0204 | 24 | 20.04 | 91 | 7 | 3.29 |
| 135.23 | 0.546 | 2.9 | 0.329 | 0.201 | 2.85 | 0.213 | -- | -0.0164 | 0.5 | 20.04 | 91 | 7 | 3.29 |
| 123.95 | 0.519 | 2.93 | 0.342 | 0.2 | 5.41 | -- | 10.8 | -0.0198 | 0.29 | 20.02 | 91 | 7.03 | 3.97 |
| 135.43 | 0.546 | 2.9 | 0.321 | 0.2 | 2.86 | -- | -- | -0.0174 | 0.522 | 20.02 | 91 | 7.03 | 3.97 |
| 126.45 | 0.524 | 2.93 | 0.353 | -- | 5.43 | -- | 11.1 | -0.0194 | -- | 20.05 | 89 | 7.06 | 3.99 |
| 151.18 | 0.576 | 2.9 | 0.301 | 0.181 | -- | 0.293 | -- | -0.0355 | 1.19 | -- | -- | -- | -- |
| 151.53 | 0.576 | 2.9 | 0.29 | 0.181 | -- | -- | -- | -0.0372 | 1.36 | -- | -- | -- | -- |
| 137.94 | 0.549 | 2.9 | 0.327 | -- | 2.8 | -- | -- | -0.0144 | -- | 20.02 | 91 | 7.03 | 3.97 |
| 138.14 | 0.55 | 2.91 | -- | 0.205 | 2.81 | -- | -- | -0.0534 | 0.611 | 20.02 | 91 | 7.03 | 3.97 |
| 153.55 | 0.579 | 2.9 | 0.297 | -- | -- | -- | -- | -0.0334 | -- | -- | -- | -- | -- |
| 153.76 | 0.58 | 2.91 | -- | 0.186 | -- | -- | -- | -0.0696 | 1.42 | -- | -- | -- | -- |
| 140.76 | 0.554 | 2.91 | -- | -- | 2.76 | -- | -- | -0.051 | -- | 20.02 | 91 | 7.03 | 3.97 |
| 155.89 | 0.583 | 2.91 | -- | -- | -- | -- | -- | -0.0664 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.92 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 3 |
| 7 | 123.99 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 2 |
| 13 | 123.99 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 54 | 124.18 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 59 | 124.18 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 158 | 127.52 | wind | 3 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 161 | 129.76 | wind | 3 | 90 | > th | dose independent | rect. | 6 | 1 |
| 168 | 131.50 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 175 | 132.37 | radiation | 10 | 10 | < th | dose independent | rect. | 8 | 1 |
| 182 | 132.90 | humidity | 80 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 185 | 132.98 | humidity | 80 | 270 | < th | dose independent | rect. | 4 | 3 |
| 228 | 137.74 | wind | 5 | 10 | > th | dose independent | rect. | 1 | 8 |
| 229 | 137.77 | wind | 5 | 10 | > th | dose independent | rect. | 3 | 6 |
| 249 | 138.69 | wind | 3 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 262 | 139.07 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 285 | 139.55 | wind | 5 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 288 | 139.59 | wind | 5 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 357 | 141.00 | wind | 1 | 30 | < th | dose independent | rect. | 9 | 18 |
| 428 | 141.81 | wind | 1 | 30 | < th | dose independent | rect. | 15 | 12 |
| 467 | 142.35 | wind | 1 | 30 | < th | dose independent | rect. | 21 | 6 |
| 472 | 142.37 | wind | 1 | 30 | < th | dose independent | rect. | 23 | 4 |
| 513 | 142.72 | temperature | 15 | 10 | > th | dose independent | rect. | 3 | 23 |
| 539 | 142.99 | radiation | 30 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 553 | 142.99 | wind | 1 | 30 | < th | dose dependent | rect. | 9 | 18 |
| 575 | 143.14 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 596 | 143.18 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 598 | 143.18 | radiation | 30 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 600 | 143.18 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 601 | 143.18 | radiation | 30 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 618 | 143.25 | wind | 1 | 30 | > th | dose independent | sin | 18 | NA |
| 620 | 143.26 | humidity | 80 | 720 | < th | dose independent | rect. | 2 | 1 |
| 645 | 143.27 | humidity | 90 | 10 | > th | dose independent | rect. | 19 | 8 |
| 646 | 143.27 | radiation | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 656 | 143.32 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 673 | 143.38 | radiation | 30 | 1440 | > th | dose independent | rect. | 16 | 19 |
| 690 | 143.39 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 765 | 143.48 | radiation | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 803 | 143.56 | radiation | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 825 | 143.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 927 | 143.72 | radiation | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 950 | 143.77 | humidity | 90 | 10 | > th | dose independent | rect. | 22 | 5 |
| 972 | 143.78 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 998 | 143.82 | humidity | 90 | 90 | > th | dose dependent | rect. | 22 | 1 |