BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0683900 Os06g0683900|AK063941
         (431 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0683900  Conserved hypothetical protein                      673   0.0  

>Os06g0683900 Conserved hypothetical protein
          Length = 431

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/431 (83%), Positives = 359/431 (83%)

Query: 1   MEEDPLIPLVHVWNNAAFDDSSCSRSAWLPQSPAVAAVRKGDKENHRPEVVDVAAGYDVE 60
           MEEDPLIPLVHVWNNAAFDDSSCSRSAWLPQSPAVAAVRKGDKENHRPEVVDVAAGYDVE
Sbjct: 1   MEEDPLIPLVHVWNNAAFDDSSCSRSAWLPQSPAVAAVRKGDKENHRPEVVDVAAGYDVE 60

Query: 61  AEIGHIEAEIXXXXXXXXXXXVSKQPEPNRDDAPMGEMVAKVRPRPRGLSLGPLDVISIV 120
           AEIGHIEAEI           VSKQPEPNRDDAPMGEMVAKVRPRPRGLSLGPLDVISIV
Sbjct: 61  AEIGHIEAEILRLSSRLHHLRVSKQPEPNRDDAPMGEMVAKVRPRPRGLSLGPLDVISIV 120

Query: 121 NREKHPLRTKKPPATRGRGLSLGPMEIXXXXXXXXXXXXXXXXXXXXXXRILKPIKEPPV 180
           NREKHPLRTKKPPATRGRGLSLGPMEI                      RILKPIKEPPV
Sbjct: 121 NREKHPLRTKKPPATRGRGLSLGPMEIAAANPRVPAAAQHQQQQRAGTARILKPIKEPPV 180

Query: 181 QRRRGVSLGPLEIHHGVGSKAPAAARAKPFTTKLNAIREETRPSKQFAVPAKPWPSSNTR 240
           QRRRGVSLGPLEIHHGVGSKAPAAARAKPFTTKLNAIREETRPSKQFAVPAKPWPSSNTR
Sbjct: 181 QRRRGVSLGPLEIHHGVGSKAPAAARAKPFTTKLNAIREETRPSKQFAVPAKPWPSSNTR 240

Query: 241 QTLDSRQGTXXXXXXXXXXXXXXXXQSNGKATDTRGGNKVVDELKPKXXXXXXXXXXXXX 300
           QTLDSRQGT                QSNGKATDTRGGNKVVDELKPK             
Sbjct: 241 QTLDSRQGTAASRAKARSPSPRPRRQSNGKATDTRGGNKVVDELKPKGASSSQSGSAAAA 300

Query: 301 XXXXXXXXXXKMRVIPSRYSLTPGASLGSSGAQERRRKQSLPGSSGDANQNEEIRAKVIE 360
                     KMRVIPSRYSLTPGASLGSSGAQERRRKQSLPGSSGDANQNEEIRAKVIE
Sbjct: 301 ATAKRMAGSSKMRVIPSRYSLTPGASLGSSGAQERRRKQSLPGSSGDANQNEEIRAKVIE 360

Query: 361 PSNDPLSPQTISKVAEMLPKIRTMPPPDESPRDSGCAKRVAELVGKRSFFTAAAEDGRAL 420
           PSNDPLSPQTISKVAEMLPKIRTMPPPDESPRDSGCAKRVAELVGKRSFFTAAAEDGRAL
Sbjct: 361 PSNDPLSPQTISKVAEMLPKIRTMPPPDESPRDSGCAKRVAELVGKRSFFTAAAEDGRAL 420

Query: 421 DVEAPEAVAEA 431
           DVEAPEAVAEA
Sbjct: 421 DVEAPEAVAEA 431



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,371,702
Number of extensions: 579061
Number of successful extensions: 1480
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1471
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 327
Effective length of database: 11,605,545
Effective search space: 3795013215
Effective search space used: 3795013215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)