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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0683900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.39 (0.0719) R2 : 0.453
β1 : -6.02 (0.454) R2dD : 1.65 R2D : -1.23
β2 : 0.613 (0.114) R2dC : 0.0343 R2C : -0.128
β3 : 3.74 (0.258) R2dE : 0.653 R2E : -0.357
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -21.1 (1.86) R2dD*E : 1.24 R2D*E : -1.23
γ1 : -0.489 (0.146) R2dN8 : 0.0428 R2N8 : -0.252
σ : 0.845
deviance : 329.25
__
_____
C
peak time of C : 8.21
E
wheather : temperature
threshold : 24.08
memory length : 4390
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.84
open length of G : 1.96

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
329.59 0.853 4.39 -6.03 0.615 3.68 -0.173 -20.9 -0.522 8.46 24.01 4388 7.92 1.97
406.5 0.939 3.92 -2.5 0.773 2.07 0.44 -- 0.171 7.72 8.891 25617 4.92 2.14
329.25 0.845 4.39 -6.02 0.613 3.74 -- -21.1 -0.489 8.21 24.08 4390 7.84 1.96
396.27 0.927 3.89 -2.59 0.595 2.25 -- -- 0.178 7.84 8.436 25725 3.8 1.45
345.66 0.866 4.36 -6.05 -- 4.1 -- -23.3 -0.421 -- 24.06 4425 7.38 1.77
483.59 1.03 3.71 -0.755 0.679 -- -0.507 -- 0.881 8.49 -- -- -- --
484.3 1.03 3.71 -0.773 0.686 -- -- -- 0.88 8.25 -- -- -- --
403.81 0.936 3.9 -2.47 -- 2.54 -- -- 0.142 -- 3.279 23573 3.92 1.5
460.43 0.999 3.77 -- 0.862 1.37 -- -- 0.703 7.96 7.329 5781 4.1 1.88
510.28 1.06 3.73 -0.768 -- -- -- -- 0.888 -- -- -- -- --
500.05 1.05 3.69 -- 0.682 -- -- -- 0.966 8.33 -- -- -- --
456.72 0.995 3.76 -- -- 1.81 -- -- 0.729 -- 5.979 4773 3.87 2.05
525.84 1.07 3.71 -- -- -- -- -- 0.973 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 328.70 wind 3 43200 > th dose dependent rect. 10 6
2 329.01 wind 3 43200 > th dose dependent rect. 11 4
8 330.84 wind 5 43200 < th dose independent rect. 10 6
10 330.97 wind 5 43200 > th dose independent rect. 11 5
11 331.08 wind 5 43200 > th dose independent rect. 10 7
19 331.75 wind 9 43200 < th dose dependent rect. 11 3
24 332.11 wind 9 43200 < th dose dependent rect. 10 5
30 333.26 wind 5 43200 > th dose dependent rect. 14 2
61 334.79 wind 5 43200 > th dose dependent rect. 5 14
76 335.40 wind 7 43200 < th dose independent rect. 5 12
89 335.86 wind 3 43200 > th dose dependent sin 23 NA
100 336.08 wind 5 43200 < th dose independent sin 22 NA
101 336.18 wind 7 43200 < th dose independent rect. 24 17
106 336.25 wind 7 43200 < th dose independent rect. 2 15
107 336.26 wind 7 43200 > th dose independent rect. 23 18
108 336.28 humidity 90 43200 > th dose independent rect. 2 22
109 336.33 wind 5 43200 > th dose independent sin 22 NA
115 336.41 humidity 90 43200 > th dose dependent rect. 4 21
117 336.43 wind 7 43200 > th dose independent rect. 5 12
132 336.63 wind 7 43200 > th dose independent rect. 2 15
137 336.71 wind 3 43200 > th dose dependent rect. 10 13
183 337.27 humidity 90 43200 > th dose dependent rect. 8 18
271 338.08 humidity 90 43200 > th dose dependent sin 18 NA
282 338.15 humidity 90 43200 > th dose independent rect. 7 20
297 338.24 humidity 90 43200 > th dose dependent rect. 3 16
306 338.30 humidity 90 43200 < th dose independent rect. 2 21
310 338.34 humidity 90 43200 < th dose independent rect. 7 20
327 338.49 humidity 90 43200 > th dose independent sin 18 NA
336 338.51 wind 5 43200 < th dose dependent rect. 11 1
375 338.73 humidity 90 43200 > th dose independent rect. 9 16
402 338.85 humidity 90 43200 > th dose dependent rect. 17 7
407 338.89 humidity 90 43200 > th dose independent rect. 18 1
423 339.01 humidity 90 43200 > th dose dependent sin 3 NA
441 339.14 humidity 90 43200 > th dose independent rect. 15 9
444 339.15 humidity 90 43200 > th dose independent rect. 15 23
461 339.27 humidity 90 43200 > th dose dependent rect. 18 5
464 339.28 humidity 90 43200 < th dose independent sin 18 NA
468 339.29 humidity 90 43200 > th dose independent rect. 22 23
481 339.35 humidity 90 43200 > th dose independent no NA NA
502 339.45 humidity 90 43200 > th dose independent rect. 17 6
538 339.65 humidity 90 43200 > th dose independent rect. 12 12
560 339.76 humidity 90 43200 > th dose independent sin 4 NA
561 339.76 humidity 90 43200 < th dose independent rect. 10 15
577 339.85 humidity 90 43200 > th dose independent rect. 19 23
588 339.89 temperature 20 43200 > th dose dependent rect. 6 2
613 340.05 humidity 90 43200 > th dose dependent no NA NA
625 340.12 humidity 90 43200 > th dose dependent rect. 15 23
667 340.34 humidity 90 43200 > th dose independent rect. 10 23
686 340.40 humidity 90 43200 > th dose independent rect. 2 13
713 340.49 humidity 90 43200 < th dose independent rect. 15 23
715 340.49 humidity 90 43200 > th dose dependent rect. 19 23
757 340.69 humidity 90 43200 < th dose independent rect. 22 23
760 340.69 humidity 90 43200 > th dose dependent rect. 9 23
790 340.80 humidity 90 43200 > th dose dependent rect. 11 23
791 340.81 humidity 90 43200 < th dose independent no NA NA
796 340.83 humidity 90 43200 > th dose independent rect. 22 1
801 340.84 humidity 90 43200 > th dose dependent rect. 4 7
831 340.98 temperature 20 43200 > th dose dependent rect. 21 12
846 341.04 temperature 20 43200 > th dose dependent rect. 21 1
858 341.10 humidity 90 43200 < th dose independent rect. 18 1
980 341.48 temperature 25 43200 > th dose dependent rect. 11 1