BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0677700 Os06g0677700|Os06g0677700
         (665 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0677700  YT521-B-like protein family protein                 831   0.0  

>Os06g0677700 YT521-B-like protein family protein
          Length = 665

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/665 (66%), Positives = 439/665 (66%)

Query: 1   MDDGDLSFDFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYR 60
           MDDGDLSFDFE                                              SYR
Sbjct: 1   MDDGDLSFDFEGGLDQPPAGGGGGPAPHSSDPGGVGGGGGGGGPGDGGGHGRGRGRGSYR 60

Query: 61  QTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNM 120
           QTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNM
Sbjct: 61  QTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNM 120

Query: 121 YKMGFCPNGPNCRYKHVKLXXXXXXVEEVLQKILQIRSFNKFNQHRHNNYNQQGERPQHP 180
           YKMGFCPNGPNCRYKHVKL      VEEVLQKILQIRSFNKFNQHRHNNYNQQGERPQHP
Sbjct: 121 YKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSFNKFNQHRHNNYNQQGERPQHP 180

Query: 181 QGSGLPNQNSIDNTTTTTAQPAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSV 240
           QGSGLPNQNSIDNTTTTTAQPAVG                                  SV
Sbjct: 181 QGSGLPNQNSIDNTTTTTAQPAVGQQAQTTNQQPPQQQQQQQQQQQQQQKPNTNDQVQSV 240

Query: 241 PNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIE 300
           PNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIE
Sbjct: 241 PNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIE 300

Query: 301 NVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQK 360
           NVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQK
Sbjct: 301 NVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQK 360

Query: 361 THHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAILIXXXXXXXXXXXX 420
           THHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAILI            
Sbjct: 361 THHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAILIAAEAKKEEEKAK 420

Query: 421 GVSADEAADNQDIVLFDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMWPPQMPMLRGVG 480
           GVSADEAADNQDIVLFDD                            MMWPPQMPMLRGVG
Sbjct: 421 GVSADEAADNQDIVLFDDNEEEEEEESEEEEEGNGQESQGRGRGRGMMWPPQMPMLRGVG 480

Query: 481 PMMGGRGFPPNMIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGMVFPGR 540
           PMMGGRGFPPNMI                                      MPGMVFPGR
Sbjct: 481 PMMGGRGFPPNMIGDGFGFGGGFGMPDPFGVPRGFPPFGPRFPGDFARGGPMPGMVFPGR 540

Query: 541 PPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPFMXXXXXXNNRGTKREQ 600
           PPQ                                      APFM      NNRGTKREQ
Sbjct: 541 PPQPGGMFPMGLEMMMGPGRGPLMGGLGMGGPGRPNRPVGMAPFMPPPPPPNNRGTKREQ 600

Query: 601 RRPGGERGDRYETTSDQGSRGHDATGNSGAEGARSQSGDRYGXXXXXXXXXXXXXXXXXX 660
           RRPGGERGDRYETTSDQGSRGHDATGNSGAEGARSQSGDRYG                  
Sbjct: 601 RRPGGERGDRYETTSDQGSRGHDATGNSGAEGARSQSGDRYGRSALRDDDSESDEEAAPR 660

Query: 661 RSRKR 665
           RSRKR
Sbjct: 661 RSRKR 665



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,947,763
Number of extensions: 576553
Number of successful extensions: 1808
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1811
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 558
Effective length of database: 11,448,903
Effective search space: 6388487874
Effective search space used: 6388487874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)