Os06g0677700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : YT521-B-like protein family protein.
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Os06g0677700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : YT521-B-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.64 | 0.197 | 10.6 | 0.585 | 0.235 | 0.43 | 0.152 | 0.534 | 0.458 | 4.63 | 71 | 1279 | -- | -- |
| 18.21 | 0.199 | 10.6 | 0.669 | 0.235 | 0.459 | 0.0837 | -- | 0.482 | 4.6 | 71.38 | 1270 | -- | -- |
| 17.7 | 0.196 | 10.6 | 0.585 | 0.235 | 0.43 | -- | 0.534 | 0.457 | 4.7 | 71 | 1279 | -- | -- |
| 18.23 | 0.199 | 10.6 | 0.67 | 0.237 | 0.46 | -- | -- | 0.483 | 4.68 | 71.32 | 1270 | -- | -- |
| 17.9 | 0.197 | 10.6 | 0.582 | -- | 0.576 | -- | 0.49 | 0.463 | -- | 74.41 | 1874 | -- | -- |
| 25.79 | 0.238 | 10.6 | 0.576 | 0.192 | -- | 0.0247 | -- | 0.414 | 6.05 | -- | -- | -- | -- |
| 25.79 | 0.238 | 10.6 | 0.576 | 0.192 | -- | -- | -- | 0.414 | 6.05 | -- | -- | -- | -- |
| 18.22 | 0.199 | 10.6 | 0.638 | -- | 0.596 | -- | -- | 0.47 | -- | 75.23 | 1875 | -- | -- |
| 25.11 | 0.233 | 10.6 | -- | 0.248 | 0.716 | -- | -- | 0.452 | 5.07 | 83 | 2600 | -- | -- |
| 27.7 | 0.246 | 10.6 | 0.582 | -- | -- | -- | -- | 0.418 | -- | -- | -- | -- | -- |
| 34.55 | 0.275 | 10.6 | -- | 0.2 | -- | -- | -- | 0.35 | 5.91 | -- | -- | -- | -- |
| 25.59 | 0.236 | 10.6 | -- | -- | 0.808 | -- | -- | 0.43 | -- | 83 | 2025 | -- | -- |
| 36.63 | 0.283 | 10.6 | -- | -- | -- | -- | -- | 0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.23 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 17.23 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 4 | 17.37 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 11 | 17.41 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 16 | 17.44 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 18 | 17.44 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 35 | 17.48 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 41 | 17.49 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 52 | 17.51 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 60 | 17.52 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 63 | 17.52 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 117 | 17.59 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 118 | 17.59 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 140 | 17.62 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 153 | 17.63 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 157 | 17.63 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 178 | 17.66 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 191 | 17.66 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 256 | 17.72 | humidity | 60.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 260 | 17.72 | humidity | 50.0 | 1440 | > th | dose dependent | no | NA | NA |
| 267 | 17.72 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 277 | 17.73 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 4 | 17 |
| 326 | 17.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 327 | 17.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 331 | 17.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 9 |
| 338 | 17.77 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 343 | 17.78 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 347 | 17.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 364 | 17.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 471 | 17.83 | humidity | 60.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 472 | 17.83 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 524 | 17.85 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 22 | NA |
| 525 | 17.85 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 22 | NA |
| 529 | 17.85 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 22 | NA |
| 542 | 17.86 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 544 | 17.86 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 588 | 17.87 | humidity | 90.0 | 1440 | < th | dose dependent | no | NA | NA |
| 635 | 17.89 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 646 | 17.89 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 658 | 17.89 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 676 | 17.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 771 | 17.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 7 |
| 772 | 17.94 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 781 | 17.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 787 | 17.95 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 789 | 17.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 814 | 17.96 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 828 | 17.97 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 864 | 17.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 880 | 17.98 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 883 | 17.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 930 | 18.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 964 | 18.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 12 |
| 973 | 18.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 976 | 18.02 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 7 |