BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0675300 Os06g0675300|AK109610
         (388 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0675300  Conserved hypothetical protein                      204   7e-53

>Os06g0675300 Conserved hypothetical protein
          Length = 388

 Score =  204 bits (520), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 138/354 (38%)

Query: 13  KNPNTGREHXXXXXXXXXXXXPEEYDRSTARERGFAAAWRVHGELELRSRPWNTILPEEF 72
           KNPNTGREH            PEEYDRSTARERGFAAAWRVHGELELRSRPWNTILPEEF
Sbjct: 13  KNPNTGREHTGTFSTTGATRTPEEYDRSTARERGFAAAWRVHGELELRSRPWNTILPEEF 72

Query: 73  MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLGSAAESRERRG 132
           M                                             GGLGSAAESRERRG
Sbjct: 73  MRGESTERQRGGGGGEGRRRAGLRPARDEEDEEVEWRWEERTRRMRGGLGSAAESRERRG 132

Query: 133 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLFRWSSSFSD 192
           M                                                PLFRWSSSFSD
Sbjct: 133 MSSWSWPEEDDDDEREKREEARERDASESELSRRSGAEASSDAEAPDERPLFRWSSSFSD 192

Query: 193 LAAVEFIXXXXXXXXXXXXXXXXXXXXXXFSPSNSRHRLEQLGALGEKTYGXXXXXXXXX 252
           LAAVEFI                      FSPSNSRHRLEQLGALGEKTYG         
Sbjct: 193 LAAVEFIALPGVLAGADDGDGFGLCAAALFSPSNSRHRLEQLGALGEKTYGSAASTAAVA 252

Query: 253 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRXXXXXXXXXXXXXXXMVAEPPRLNSK 312
                                           FR               MVAEPPRLNSK
Sbjct: 253 ARSGFIGSEGAGIASGCGGRGAAASISGTAAAFRSGSSFPSAKSSSAGSMVAEPPRLNSK 312

Query: 313 SMKSLDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLNETRGPCHPPNG 366
           SMKSLDI                                 RLNETRGPCHPPNG
Sbjct: 313 SMKSLDIAGSGVVVVATAAAAARGEEHTTTAAASSAPAASRLNETRGPCHPPNG 366



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,129,794
Number of extensions: 82659
Number of successful extensions: 103
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 388
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 285
Effective length of database: 11,657,759
Effective search space: 3322461315
Effective search space used: 3322461315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)