BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0674000 Os06g0674000|Os06g0674000
         (488 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0674000  Conserved hypothetical protein                      540   e-153

>Os06g0674000 Conserved hypothetical protein
          Length = 488

 Score =  540 bits (1391), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 295/488 (60%), Positives = 295/488 (60%)

Query: 1   MVKAPKSAHVVKGVPAQAAVAAXXXXXXXXXXXXXXXXXXXXXXXMGDSQDKEIQEGVQA 60
           MVKAPKSAHVVKGVPAQAAVAA                       MGDSQDKEIQEGVQA
Sbjct: 1   MVKAPKSAHVVKGVPAQAAVAAGDDDERELPLGGELLHPPQPLQEMGDSQDKEIQEGVQA 60

Query: 61  LLNNHGGDIEGGGVDPSNMLPDENGSASSTARKEGKRLTHHYLKFALLLVTISTVPLIDI 120
           LLNNHGGDIEGGGVDPSNMLPDENGSASSTARKEGKRLTHHYLKFALLLVTISTVPLIDI
Sbjct: 61  LLNNHGGDIEGGGVDPSNMLPDENGSASSTARKEGKRLTHHYLKFALLLVTISTVPLIDI 120

Query: 121 LFLRGDALKLPLGLKXXXXXXXXXXXXXISLMFHTLKLMTIKPEHIISAINQLKXXXXXX 180
           LFLRGDALKLPLGLK             ISLMFHTLKLMTIKPEHIISAINQLK      
Sbjct: 121 LFLRGDALKLPLGLKFASSFAFTAFVTAISLMFHTLKLMTIKPEHIISAINQLKLSIVLL 180

Query: 181 XXXXXXXXXXXXXXXXXXXPKAYYFLPISLVPSILVGVFHFIYNGKFDVRDVRPEEXXXX 240
                              PKAYYFLPISLVPSILVGVFHFIYNGKFDVRDVRPEE    
Sbjct: 181 ATSISSLILSFISITCSLLPKAYYFLPISLVPSILVGVFHFIYNGKFDVRDVRPEESKAL 240

Query: 241 XXXXXXXNQLTLSLVTTSFSGFIGDLLGIYHKTEKLGGQYSYAKVSIFFMXXXXXXXXXX 300
                  NQLTLSLVTTSFSGFIGDLLGIYHKTEKLGGQYSYAKVSIFFM          
Sbjct: 241 KKALKSANQLTLSLVTTSFSGFIGDLLGIYHKTEKLGGQYSYAKVSIFFMLGSGLAGILA 300

Query: 301 XXXXXXXXNSEVHRRRRQSPSGIWWQKTVLAIXXXXXXXXXXXXXXXXXXTILHXXXXXX 360
                   NSEVHRRRRQSPSGIWWQKTVLAI                  TILH      
Sbjct: 301 LLLCRLLSNSEVHRRRRQSPSGIWWQKTVLAIANVVMLAMLVPALLLIAATILHGLLLPA 360

Query: 361 XXXXXXXXXXXXXXIEFCTAAVGXXXXXDGKSELGTMYAIXXXXXXXXXXXXXXXXXXXX 420
                         IEFCTAAVG     DGKSELGTMYAI                    
Sbjct: 361 VVFPVVAGAAAWAFIEFCTAAVGEEEEEDGKSELGTMYAIAVAVASVSFGAVLAVFGGLL 420

Query: 421 XXXXXKAQLKVCTFFLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSCCGLGTLVXXXX 480
                KAQLKVCTFFLT                             LSCCGLGTLV    
Sbjct: 421 GGAVGKAQLKVCTFFLTSAFVGAVSLGVVASVAPARKASVAVAAAVLSCCGLGTLVLAAL 480

Query: 481 XXFYQIGA 488
             FYQIGA
Sbjct: 481 ALFYQIGA 488



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,163,706
Number of extensions: 256287
Number of successful extensions: 645
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 383
Effective length of database: 11,553,331
Effective search space: 4424925773
Effective search space used: 4424925773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)