BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0658500 Os06g0658500|AK072436
         (481 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0658500  Conserved hypothetical protein                      883   0.0  
Os02g0177400  Conserved hypothetical protein                      234   1e-61

>Os06g0658500 Conserved hypothetical protein
          Length = 481

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/461 (94%), Positives = 435/461 (94%)

Query: 21  RGWISGLVSGAGRILASVLGPDXXXXXXXXXXXXXXXXXXXXXXXXXXRHPGYIRDHGNS 80
           RGWISGLVSGAGRILASVLGPD                          RHPGYIRDHGNS
Sbjct: 21  RGWISGLVSGAGRILASVLGPDSPAAASGSATTTSATSPSASSSPASSRHPGYIRDHGNS 80

Query: 81  PLFFPKANKLNKSENEAIMKDYSEASLAIISEIEPKDAIMQLLKQETYSRSECNALVKII 140
           PLFFPKANKLNKSENEAIMKDYSEASLAIISEIEPKDAIMQLLKQETYSRSECNALVKII
Sbjct: 81  PLFFPKANKLNKSENEAIMKDYSEASLAIISEIEPKDAIMQLLKQETYSRSECNALVKII 140

Query: 141 QERVVDSNLNGVDAGGLALPINWKTGRQANIGYSSLSPKGLLPATSIPPVQDHVFDNSAG 200
           QERVVDSNLNGVDAGGLALPINWKTGRQANIGYSSLSPKGLLPATSIPPVQDHVFDNSAG
Sbjct: 141 QERVVDSNLNGVDAGGLALPINWKTGRQANIGYSSLSPKGLLPATSIPPVQDHVFDNSAG 200

Query: 201 AGASTTIAHDRGPFAHATDKIQSVLKRSCSVATDTPDPEDSRRVRPKINGNSLEISNFKQ 260
           AGASTTIAHDRGPFAHATDKIQSVLKRSCSVATDTPDPEDSRRVRPKINGNSLEISNFKQ
Sbjct: 201 AGASTTIAHDRGPFAHATDKIQSVLKRSCSVATDTPDPEDSRRVRPKINGNSLEISNFKQ 260

Query: 261 VDVIRTHSGDDNKLSDVPLFGTNNLIYSNIVSIVGSADEKIGIPNKPSAGDGNKNYDSEF 320
           VDVIRTHSGDDNKLSDVPLFGTNNLIYSNIVSIVGSADEKIGIPNKPSAGDGNKNYDSEF
Sbjct: 261 VDVIRTHSGDDNKLSDVPLFGTNNLIYSNIVSIVGSADEKIGIPNKPSAGDGNKNYDSEF 320

Query: 321 LNPCTNKDLKNSFPLKVEPLDVCIPFEQQMMDLSHQKHEHAACDDYCSVSKLMFKEDIET 380
           LNPCTNKDLKNSFPLKVEPLDVCIPFEQQMMDLSHQKHEHAACDDYCSVSKLMFKEDIET
Sbjct: 321 LNPCTNKDLKNSFPLKVEPLDVCIPFEQQMMDLSHQKHEHAACDDYCSVSKLMFKEDIET 380

Query: 381 ALSMPVGVPLENGSKNRRRRAPNTQRITPARSPAKGSRRKSNDVTVKSETDLLEQSKGSH 440
           ALSMPVGVPLENGSKNRRRRAPNTQRITPARSPAKGSRRKSNDVTVKSETDLLEQSKGSH
Sbjct: 381 ALSMPVGVPLENGSKNRRRRAPNTQRITPARSPAKGSRRKSNDVTVKSETDLLEQSKGSH 440

Query: 441 DVTVKSEIDLLEQSKLALMEQSPDLGDIPVKRPVGRPRKAK 481
           DVTVKSEIDLLEQSKLALMEQSPDLGDIPVKRPVGRPRKAK
Sbjct: 441 DVTVKSEIDLLEQSKLALMEQSPDLGDIPVKRPVGRPRKAK 481



>Os02g0177400 Conserved hypothetical protein
          Length = 475

 Score =  234 bits (596), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 178/496 (35%), Positives = 248/496 (50%), Gaps = 79/496 (15%)

Query: 22  GWISGLVSGAGRILASVLGPDXXXXXXXXXXXXXXXXXXXXXXXXXXRHPGYIRDHGNSP 81
           GW SGLV GAGR+LA+VLGPD                                R  G++ 
Sbjct: 22  GWFSGLVCGAGRLLAAVLGPDSPDSGTGGSASSSQESSSQSPPPPRGH-----RGSGDNT 76

Query: 82  LFFPKANKLNKSENEAIMKDYSEASLAIISEIEPKDAIMQLLKQETYSRSECNALVKIIQ 141
             F   N+ N+S  E  +KD    SLA++SEI+PKDAI+Q+L QETYSRSEC+ L+KII 
Sbjct: 77  AHFASNNQFNQSGKEITLKDSGVGSLALVSEIDPKDAILQMLLQETYSRSECDILIKIIH 136

Query: 142 ERVVDSNLNGVDAGGLALPINWKTGRQAN-IGYSSLSPKGLLPATSIPPVQDHVFDNSAG 200
           ERVVDS+ + V+   + LPI W+T +Q + + YSS  P     ++++      + +N   
Sbjct: 137 ERVVDSDPDVVEP-SIVLPIAWQTSQQQDHVPYSSFRPNTCSASSNVHDCSQQLDNNIVE 195

Query: 201 AGASTTIAHDRGPFAHATDKIQSVLKRSCSVATDTPDPEDSRRVRPKINGNSLEISNFKQ 260
            G                ++ Q  LKRS S      D   SR VRPK+  N L ISN +Q
Sbjct: 196 NG--------------WLEESQHALKRSNSCTGHNLDESHSRSVRPKL--NDLNISN-RQ 238

Query: 261 VDVIRTHSG--------------------DDNKL-SDVPLFGTNNLIYSNIVSIVGSADE 299
             ++++HS                     D  KL  D+PL GT+NLI+SNIVS   + ++
Sbjct: 239 DGILKSHSDIASFEEATTKYPNAFRGIPEDTKKLFKDIPLLGTDNLIFSNIVSYDDTDND 298

Query: 300 KIGIPNKPSA----------GDGNK-NYDSEFLNPCTNKDLKNSFPLKVEPLDVCIPFEQ 348
              +  K  A           + N+ N     L P +++DL N+FP+KVEPLD  +PF+ 
Sbjct: 299 ISALRGKRPAVTARTFASATSEANRDNRCPTMLYPYSDRDLTNTFPIKVEPLDDIVPFDP 358

Query: 349 QMMDLSHQ-KHEHAACDDYCSVSKLMFKEDIETALSMPVGVPLENGSKNRRRRAPNTQRI 407
           +++ LS + ++    C+D CSVSKLMF+ED E A S   GVPLEN  +N      + QR 
Sbjct: 359 EIVVLSRKNRNTGTICNDPCSVSKLMFQEDKEAAPSSSTGVPLENSPRN--CTGASLQRS 416

Query: 408 TPAR--SPAKGSRRKSNDVTVKSETDLLEQSKGSHDVTVKSEIDLLEQSKLALMEQSPDL 465
           T  R  SPA   RR+  D   +S      +S  SH            Q +   + Q PDL
Sbjct: 417 TQTRRSSPANVYRRQYIDSRTRS------RSGPSH------------QGEPIAVGQEPDL 458

Query: 466 GDIPVKRPVGRPRKAK 481
                K+PVGRPRK++
Sbjct: 459 APTQAKKPVGRPRKSR 474



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,599,414
Number of extensions: 669373
Number of successful extensions: 1368
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1360
Number of HSP's successfully gapped: 2
Length of query: 481
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 376
Effective length of database: 11,553,331
Effective search space: 4344052456
Effective search space used: 4344052456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)