FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0658500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0245) R2 : 0.257
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.37 (0.441) R2dE : 0.242 R2E : 0.229
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.188 (0.0517) R2dN8 : 0.0275 R2N8 : 0.0144
σ : 0.461
deviance : 97.93
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 67.35
memory length : 68
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.8
open length of G : 13.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.89 0.448 3.18 0.138 0.0802 2.79 0.097 -14.3 0.233 23.5 71.52 10 18 14
95.82 0.456 3.17 0.361 0.119 5.47 0.174 -- 0.226 21.8 67.39 3 18.8 13.2
90.85 0.444 3.18 0.112 0.0747 2.7 -- -13.7 0.238 23.9 72.68 10 18 15.9
94.45 0.453 3.17 0.356 0.119 5.44 -- -- 0.228 21.9 67.37 66 18.8 13.2
91.18 0.445 3.18 0.139 -- 2.65 -- -13 0.235 -- 73.05 9 18 15.9
126.34 0.527 3.18 0.286 0.0718 -- 0.666 -- 0.187 19.7 -- -- -- --
127.46 0.529 3.18 0.267 0.0839 -- -- -- 0.186 22.1 -- -- -- --
94.7 0.453 3.17 0.352 -- 5.54 -- -- 0.226 -- 67.38 67 18.8 13.3
97.5 0.46 3.18 -- 0.0859 5.39 -- -- 0.186 22.6 67.4 67 18.8 13.3
127.89 0.528 3.18 0.269 -- -- -- -- 0.187 -- -- -- -- --
129.35 0.532 3.19 -- 0.0853 -- -- -- 0.157 22.4 -- -- -- --
97.93 0.461 3.18 -- -- 5.37 -- -- 0.188 -- 67.35 68 18.8 13.2
129.79 0.532 3.19 -- -- -- -- -- 0.157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.73 humidity 70 10 < th dose independent rect. 18 14
3 91.76 humidity 70 10 < th dose dependent rect. 18 14
5 92.31 humidity 80 90 < th dose dependent rect. 2 5
10 92.96 humidity 70 90 < th dose independent rect. 17 15
13 93.17 humidity 80 90 < th dose independent rect. 3 4
19 93.36 humidity 70 90 < th dose dependent rect. 18 14
62 96.38 radiation 30 30 > th dose dependent rect. 7 2
142 96.48 radiation 30 30 > th dose independent rect. 7 1
177 96.57 humidity 70 10 < th dose independent rect. 7 1
237 96.57 humidity 70 10 < th dose dependent rect. 7 1
683 101.77 humidity 70 30 < th dose independent sin 11 NA
708 102.51 humidity 70 30 > th dose independent sin 11 NA
728 102.83 temperature 25 90 < th dose dependent rect. 7 1
731 102.92 temperature 25 10 < th dose dependent rect. 8 1
735 103.06 atmosphere 1005 30 > th dose dependent rect. 7 1
861 106.35 wind 3 10 > th dose independent rect. 7 1
864 106.46 humidity 80 1440 < th dose dependent rect. 24 8
871 106.61 radiation 30 30 < th dose independent sin 11 NA
893 107.00 humidity 80 1440 > th dose independent rect. 6 1
905 107.29 humidity 80 1440 < th dose dependent rect. 7 1
920 107.67 humidity 70 1440 > th dose independent rect. 1 6
947 108.22 humidity 80 1440 < th dose independent rect. 24 8
964 108.64 humidity 80 1440 < th dose independent rect. 6 1