BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0643800 Os06g0643800|AK071732
(184 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0643800 Similar to Sucrose-phosphate synthase 7 (EC 2.... 380 e-106
Os02g0184400 Similar to Sucrose-phosphate synthase 9 (EC 2.... 335 2e-92
Os08g0301500 Similar to Sucrose-phosphate synthase 2 (EC 2.... 227 4e-60
AK121341 124 6e-29
Os06g0634800 86 1e-17
>Os06g0643800 Similar to Sucrose-phosphate synthase 7 (EC 2.4.1.14) (Fragment)
Length = 184
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 WGGEGLRKYLVKWASSVVERRGRIEKQVIFEDPEHSSTYCLAFKVVNPNHLPPLKELQKL 60
WGGEGLRKYLVKWASSVVERRGRIEKQVIFEDPEHSSTYCLAFKVVNPNHLPPLKELQKL
Sbjct: 1 WGGEGLRKYLVKWASSVVERRGRIEKQVIFEDPEHSSTYCLAFKVVNPNHLPPLKELQKL 60
Query: 61 MRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDSDYEE 120
MRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDSDYEE
Sbjct: 61 MRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDSDYEE 120
Query: 121 LFGGLHKTVILKGEFNTSANRIHSVRRYPLQDVVALDSPNIIGIEGYGTDDMRSALKQLD 180
LFGGLHKTVILKGEFNTSANRIHSVRRYPLQDVVALDSPNIIGIEGYGTDDMRSALKQLD
Sbjct: 121 LFGGLHKTVILKGEFNTSANRIHSVRRYPLQDVVALDSPNIIGIEGYGTDDMRSALKQLD 180
Query: 181 IRAQ 184
IRAQ
Sbjct: 181 IRAQ 184
>Os02g0184400 Similar to Sucrose-phosphate synthase 9 (EC 2.4.1.14)
Length = 1011
Score = 335 bits (858), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 155/184 (84%), Positives = 172/184 (93%)
Query: 1 WGGEGLRKYLVKWASSVVERRGRIEKQVIFEDPEHSSTYCLAFKVVNPNHLPPLKELQKL 60
WGGEGLRKYLVKWA+SVVER+GRIE+Q+IFEDPEHSSTYCLAF+VVNPNHLPPLKEL+KL
Sbjct: 828 WGGEGLRKYLVKWATSVVERKGRIERQIIFEDPEHSSTYCLAFRVVNPNHLPPLKELRKL 887
Query: 61 MRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDSDYEE 120
MRIQSLRC+ALYNH ATRLSV+PIHASRS+ALRYL +RWGIEL NV VLVGE+GDSDYEE
Sbjct: 888 MRIQSLRCNALYNHSATRLSVVPIHASRSQALRYLCIRWGIELPNVAVLVGESGDSDYEE 947
Query: 121 LFGGLHKTVILKGEFNTSANRIHSVRRYPLQDVVALDSPNIIGIEGYGTDDMRSALKQLD 180
L GGLH+TVILKGEFN ANRIH+VRRYPLQDVVALDS NIIGIEGY TDDM+SAL+Q+
Sbjct: 948 LLGGLHRTVILKGEFNIPANRIHTVRRYPLQDVVALDSSNIIGIEGYSTDDMKSALQQIG 1007
Query: 181 IRAQ 184
+ Q
Sbjct: 1008 VLTQ 1011
>Os08g0301500 Similar to Sucrose-phosphate synthase 2 (EC 2.4.1.14) (Fragment)
Length = 1066
Score = 227 bits (578), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 104/181 (57%), Positives = 139/181 (76%), Gaps = 4/181 (2%)
Query: 1 WGGEGLRKYLVKWASSVVERRGRIEKQVIFEDPEHSSTYCLAFKVVNPNHLPPLKELQKL 60
WGGEGLRK L+ WA+ E G++ V+ ED E SSTYC++F+V N +PP+KEL+K
Sbjct: 885 WGGEGLRKTLICWAAEKSEG-GQV---VLVEDEECSSTYCISFRVKNAEAVPPVKELRKT 940
Query: 61 MRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDSDYEE 120
MRIQ+LRCH LY+H ++L+VIP+ ASRS+ALRYL +RWG+EL N+ V+VGE+GD+DYE
Sbjct: 941 MRIQALRCHVLYSHDGSKLNVIPVLASRSQALRYLYIRWGVELSNMTVVVGESGDTDYEG 1000
Query: 121 LFGGLHKTVILKGEFNTSANRIHSVRRYPLQDVVALDSPNIIGIEGYGTDDMRSALKQLD 180
L GG+HKT+ILKG FN N++H+ R Y LQDV++ D P I IEGYG D+++SAL+Q
Sbjct: 1001 LLGGVHKTIILKGSFNAVPNQVHAARSYSLQDVISFDKPGITSIEGYGPDNLKSALQQFG 1060
Query: 181 I 181
I
Sbjct: 1061 I 1061
>AK121341
Length = 382
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 100/150 (66%), Gaps = 2/150 (1%)
Query: 32 DPEHSSTYCLAFKVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPIHASRSKA 91
D E + +C++F + +PN + + E+++ +R++ LRCH +Y ATRL V+P+ ASRS+A
Sbjct: 226 DVESCNPHCVSFFIKDPNKVRTIDEMRERVRMRGLRCHLMYCRNATRLQVVPLLASRSQA 285
Query: 92 LRYLSVRWGIELQNVVVLVGETGDSDYEELFGGLHKTVILKGEFNTSANR-IHSVRRYPL 150
LRYL VRWG+ + N+ ++VGE GD+D+EE+ GLHKTVI++G + + + S Y
Sbjct: 286 LRYLFVRWGLSVGNMYLIVGEHGDTDHEEMLSGLHKTVIIRGVTEKGSEQLVRSSGSYQR 345
Query: 151 QDVVALDSPNIIGIEG-YGTDDMRSALKQL 179
+DVV +SP I +G D++ ALK++
Sbjct: 346 EDVVPSESPLIAFTKGDLKADEIMRALKEV 375
>Os06g0634800
Length = 133
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Query: 57 LQKLMRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDS 116
+++++R++ + + +Y L++IP+ SR A+RYLS++WGI+L V VLVGE GD+
Sbjct: 11 IKQVLRMRGFQRNLVYTRACMCLNIIPL--SRPCAIRYLSIQWGIDLSKVAVLVGEKGDT 68
Query: 117 DYEELFGGLHKTVILKGEFNTSANRIHSVRR-YPLQDVVALDSPNIIGI 164
D E L GLH+TVIL G + + + +DVVA++SPNI+ +
Sbjct: 69 DRERLLPGLHRTVILPGMVAAGSEELLCDEDGFTTEDVVAIESPNIVTL 117
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,226,681
Number of extensions: 233156
Number of successful extensions: 461
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 5
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)