BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0639300 Os06g0639300|AK108166
         (352 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0639300  Ankyrin repeat containing protein                   611   e-175

>Os06g0639300 Ankyrin repeat containing protein
          Length = 352

 Score =  611 bits (1576), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/335 (89%), Positives = 300/335 (89%)

Query: 18  QVMSEVHLGCPPRFSGLYVSRFSFSSRPLGPSAGSDGGECSGVREQVAASSSSCGSPDAV 77
           QVMSEVHLGCPPRFSGLYVSRFSFSSRPLGPSAGSDGGECSGVREQVAASSSSCGSPDAV
Sbjct: 18  QVMSEVHLGCPPRFSGLYVSRFSFSSRPLGPSAGSDGGECSGVREQVAASSSSCGSPDAV 77

Query: 78  TXXXXXXXXXXXXXXXXXXXXHVLTVQHGITSSLRSVGLQVWKAALLLTDFVLHKSFTSS 137
           T                    HVLTVQHGITSSLRSVGLQVWKAALLLTDFVLHKSFTSS
Sbjct: 78  TVDEDGDLVLDRRRRNRGRSDHVLTVQHGITSSLRSVGLQVWKAALLLTDFVLHKSFTSS 137

Query: 138 EFNGVTAIEIXXXXXXXXXXXXXXXKKIFITDRGSDILDNCLANVQLNSSMLKFDEAKAC 197
           EFNGVTAIEI               KKIFITDRGSDILDNCLANVQLNSSMLKFDEAKAC
Sbjct: 138 EFNGVTAIEIGAGTGLVGLALARVAKKIFITDRGSDILDNCLANVQLNSSMLKFDEAKAC 197

Query: 198 VRELDWKMSWPPPVFKCDSSDPSSKYLWYTSEIEAAEKATTLFAADVIYSDDLTDLFFSI 257
           VRELDWKMSWPPPVFKCDSSDPSSKYLWYTSEIEAAEKATTLFAADVIYSDDLTDLFFSI
Sbjct: 198 VRELDWKMSWPPPVFKCDSSDPSSKYLWYTSEIEAAEKATTLFAADVIYSDDLTDLFFSI 257

Query: 258 AKKLMSHGAEKVLYLTLEKRYNFSMDELDVVANGYKHFRSFFTVQDESGALDDNSCRPDF 317
           AKKLMSHGAEKVLYLTLEKRYNFSMDELDVVANGYKHFRSFFTVQDESGALDDNSCRPDF
Sbjct: 258 AKKLMSHGAEKVLYLTLEKRYNFSMDELDVVANGYKHFRSFFTVQDESGALDDNSCRPDF 317

Query: 318 VGEQMDLAEVPQYIREYDRGKDLEMWKIMYNPNPE 352
           VGEQMDLAEVPQYIREYDRGKDLEMWKIMYNPNPE
Sbjct: 318 VGEQMDLAEVPQYIREYDRGKDLEMWKIMYNPNPE 352



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,534,270
Number of extensions: 376586
Number of successful extensions: 988
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 250
Effective length of database: 11,709,973
Effective search space: 2927493250
Effective search space used: 2927493250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)